Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10978
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    95   3e-21
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    27   1.1  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   2.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   4.5  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    24   6.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   6.0  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    24   6.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    24   7.9  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 95.1 bits (226), Expect = 3e-21
 Identities = 49/103 (47%), Positives = 67/103 (65%)
 Frame = +3

Query: 3   QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
           Q++EL+ EL +LRV K+ GG  SKLSKI+  RK IAR+  V ++  ++  R  YKNKKY 
Sbjct: 19  QLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYI 78

Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLK 311
           PLDLR K+TRA+R+ALT +E   K  K+ ++     L    LK
Sbjct: 79  PLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALK 121



 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 260 KEIRKKSLFPPRVYAVKA 313
           K+I+K+  FP R YA+KA
Sbjct: 105 KQIKKERYFPLRKYALKA 122


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 171 KKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSS 287
           K Y+P   R   ++++   +TK   K  + K S++N  S
Sbjct: 171 KSYRPKASRTTSSQSVASTMTKSSTKTSKKKSSKKNSKS 209


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
 Frame = +3

Query: 6   IEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKP 185
           + +L  E+T++ VAK   GV+ + + I    +  A   I Y  K  V      + + ++ 
Sbjct: 25  LPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETS---RIEVHRA 81

Query: 186 LDLRA--KETRAMRKALTKH-EAKIKRGKRSE--RNL 281
           LD R+  ++ R   K  +K+ E K+++ ++ E  RNL
Sbjct: 82  LDYRSANEKLRPYSKYASKNIELKLQKKEKEEELRNL 118


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +3

Query: 123 VYHQKMKVN---LRNHYKNKKYKPLDLRAKETRAMRKALTKHEAK 248
           VYHQK K+N   L    + +K  PL+ R      + K +T    K
Sbjct: 79  VYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNERTK 123


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 222 KALTKHEAKIKRGKRSERNLSSHLES 299
           K +T+H  K+K  KR  + L   LES
Sbjct: 222 KLITRHNRKLKLKKRKLKELGITLES 247


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 141 KVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNL 281
           K  +    KNK  +  D+  +  RA  +  T H ++  + + +ER L
Sbjct: 519 KEKMEREMKNKNLELADMILERDRARHELETMHRSQRDKQESTEREL 565


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 114 HVR*LFLQHGSWTVLKQLHQ 55
           H R LFL+   WTV K L+Q
Sbjct: 397 HFRYLFLKTVFWTVRKNLYQ 416


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 223 RLLLNTKQRSSEERDQK 273
           R+ L  +QR  EERDQK
Sbjct: 134 RIRLQEQQRRKEERDQK 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,690
Number of Sequences: 5004
Number of extensions: 17274
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)