Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10978
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 97 5e-21
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 57 3e-09
12_02_0172 - 14891923-14892102,14892894-14892980 29 1.0
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 28 1.8
12_01_0152 - 1168928-1169377 28 2.4
11_01_0155 - 1287003-1287452 28 2.4
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 28 2.4
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 2.4
02_04_0405 + 22637025-22637130,22637246-22637403,22637934-226380... 27 3.1
01_01_0472 - 3473096-3474288,3474833-3474938 27 3.1
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 4.1
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 5.5
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 26 7.2
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 26 7.2
02_05_1021 + 33565866-33567431,33568317-33568604 26 9.6
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 96.7 bits (230), Expect = 5e-21
Identities = 48/80 (60%), Positives = 60/80 (75%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
Q+++LK EL+ LRVAKVTGG +KLSKI+VVR +IARV V QK + LR YK K
Sbjct: 20 QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTVISQKQRAALREAYKKKSLL 79
Query: 183 PLDLRAKETRAMRKALTKHE 242
PLDLR K+TRA+R+ LTKH+
Sbjct: 80 PLDLRPKKTRAIRRRLTKHQ 99
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 57.2 bits (132), Expect = 3e-09
Identities = 36/83 (43%), Positives = 49/83 (59%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
Q+++LK EL+ LRVA+VTGG +KLS I+ VR A+ Y K K
Sbjct: 127 QLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALREAY-------------KKKKKSLL 172
Query: 183 PLDLRAKETRAMRKALTKHEAKI 251
PLDLR K+T A+R+ LTKH+ +
Sbjct: 173 PLDLRPKKTCAIRRRLTKHQGML 195
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 29.1 bits (62), Expect = 1.0
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 42 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLDLRAKETRA 215
+A + GV K+S A R +V H+ +++ RNH ++KY+ L +
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRS-SLLGETPGR 59
Query: 216 MRKALTKHEAKIKRGKRSERN 278
R+A TK R K + +
Sbjct: 60 SRRAKTKGFVTKNRAKPGDED 80
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 186 LDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLE 296
L L+ +A ++ L+K EA ++ K+ ++NLS H E
Sbjct: 581 LSLKNDTDKASKQRLSKLEADLESLKQKQKNLSEHWE 617
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 48 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 137
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 48 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 137
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 153 RNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHL 293
RN Y K K + ++R +R + H+++ + G+RS R HL
Sbjct: 600 RNRYWKKPVKSSNRPRGQSRQLRGSRLPHQSQRRYGRRSPRRPLHHL 646
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 129 HQKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKI-----KRGKRSERNLSSHL 293
H K + ++ NK+ L L+ KE + + L + E KI K R + L L
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREEKVSAREKVGLQKLL 329
Query: 294 ESMPLKLE 317
E +KLE
Sbjct: 330 EDHNVKLE 337
>02_04_0405 +
22637025-22637130,22637246-22637403,22637934-22638099,
22638200-22638517,22638906-22639117
Length = 319
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 132 QKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESM 302
Q++ VNLRN + + LD+ KE RA + L K K++ R L + L+ +
Sbjct: 201 QQLTVNLRNGKTFMRNQDLDMAVKEFRAALE-LAKSVGDRFEEKKAARGLGASLQRL 256
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 27.5 bits (58), Expect = 3.1
Identities = 24/96 (25%), Positives = 45/96 (46%)
Frame = +3
Query: 15 LKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 194
L+ +L+N + VT + + IR+ + ++ ++ K K + + +KY
Sbjct: 315 LQEKLSN---SSVTAELQETIESIRIKLEEVSEEKLLVENKFKQLEEANSEAEKYNQELS 371
Query: 195 RAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESM 302
A E + K +HEA+I ++ NL S LES+
Sbjct: 372 HATEKLSEEKF--RHEAEILALNQAIENLKSKLESI 405
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 75 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 194
+SK ++K + R + HQ +K +L K +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 140 HLLVIHNVNTCDSFSYNTDLG 78
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 24 ELTNL--RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMK 143
E T+L R+AKV G V+ +++ + R I VY+V +K
Sbjct: 851 ECTSLITRIAKVLGVVSDQIAFVSAARPRIDEVYLVQGHILK 892
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 117 YIVYHQKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRG 260
Y Y K+ N+R Y NK K ++ +++ R+ + A +KRG
Sbjct: 221 YRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREG---YRANVKRG 265
>02_05_1021 + 33565866-33567431,33568317-33568604
Length = 617
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 188 RFKSQGDPCYAQGSY*TRSKDQARKEI 268
RF+ + D C + +Y + D+ RKE+
Sbjct: 160 RFRQEYDRCLFENTYGVEATDEGRKEV 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,926,779
Number of Sequences: 37544
Number of extensions: 104032
Number of successful extensions: 342
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -