Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10978
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23) 113 4e-26
SB_46230| Best HMM Match : Adeno_PX (HMM E-Value=3) 31 0.26
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.80
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 1.1
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_45348| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0) 27 3.2
SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2) 27 3.2
SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24) 27 4.3
SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13) 27 4.3
SB_16585| Best HMM Match : MFAP1_C (HMM E-Value=0.24) 27 4.3
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041) 26 7.5
SB_51929| Best HMM Match : ARID (HMM E-Value=1.2) 26 7.5
SB_35747| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 26 7.5
SB_56585| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_7603| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
Length = 131
Score = 113 bits (272), Expect = 4e-26
Identities = 57/91 (62%), Positives = 70/91 (76%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
Q++ELKTEL+ LRVAKVTGG ASKLSKI+VVRK++ARV V Q + NLR Y+ KKY
Sbjct: 28 QLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVSQTQRDNLRKFYRKKKYL 87
Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSER 275
PLDLR K TRAMR++LTK EA K K+ ++
Sbjct: 88 PLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118
>SB_46230| Best HMM Match : Adeno_PX (HMM E-Value=3)
Length = 859
Score = 31.1 bits (67), Expect = 0.26
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 138 MKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERN 278
++V N Y +Y+ + +A E +A + LT +I R ++S+RN
Sbjct: 480 LEVGTGNQYPESEYQASEYQASEYQANNRTLTSCHLEINRVEKSKRN 526
>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.5 bits (63), Expect = 0.80
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 66 ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTK 236
ASK SK RV R IA++ H ++ +RN N K +R ++RAM+K T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = +3
Query: 96 RKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSER 275
RK + ++ ++ +++ N R KNK+ + + + + L+KH KI + ++ +
Sbjct: 515 RKNVWKIKVLAAARLEENARR--KNKQTSEITSSTRNEQLESETLSKHNPKIDKSQQFQD 572
Query: 276 NLSSH 290
+L +H
Sbjct: 573 SLQAH 577
>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 28.7 bits (61), Expect = 1.4
Identities = 27/99 (27%), Positives = 49/99 (49%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
QI+ L++ +++ TG S K++ A+A + ++MK + N +K +
Sbjct: 712 QIQSLESMYSDVLCLLDTGTKDSG-KKLKDQDMAVAAAALQKTEEMKAGI-NSFKKQ--- 766
Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLES 299
RAK+ +A+ K T+ E+ + RS +LSS L S
Sbjct: 767 ----RAKDIKAVNKRFTRLESHVVTLARSVAHLSSELRS 801
>SB_45348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 177 YKPLDLRAKETRAMRK-ALTKHEAKIKRGK 263
Y +DLRA+ETR++ K ++ H +I+RG+
Sbjct: 122 YLTVDLRAQETRSLTKLRISDHIRQIERGR 151
>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 426
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 99 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLR 197
KA ++V + H K NL +H+K K+Y P+ R
Sbjct: 70 KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFR 102
>SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 174 KYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLK 311
+Y PLD+R + A+ A +EA+IKR K + ++ ++ K
Sbjct: 36 QYYPLDIRKEIQVAVASARQSNEAEIKRLKDQLETIHKNINALESK 81
>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
Length = 245
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 27 LTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKE 206
L N+ K G V S + V ++ I ++ + KMK + +HY++ L AK
Sbjct: 77 LKNVTSYKYLGIVFSAIGNFNVAKEEIKKIALKALYKMKKEMGSHYRDNLKLATRLFAKL 136
Query: 207 TRAMRKALTKH 239
T + K+
Sbjct: 137 TNKSKCRSVKY 147
>SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
Length = 536
Score = 27.1 bits (57), Expect = 4.3
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 120 IVYHQKMKVNLRNHYKNKK-YKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLE 296
IV M VN+RN + KK + + KET+AM +A E KIK+ ++ ++
Sbjct: 329 IVKTDLMIVNVRNGDREKKTVEQKEPTKKETKAM-EANKSAEQKIKKEDPKAKDTKEEIQ 387
Query: 297 SMPLK 311
++ L+
Sbjct: 388 AVKLR 392
>SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13)
Length = 470
Score = 27.1 bits (57), Expect = 4.3
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 9 EELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPL 188
+ +K NLR A K SKI+++++A+ V I+ ++ +++ + +N+K K
Sbjct: 397 DHMKLRFDNLRKATPKLENCEKASKIQILKEAVHLVKILENEGIRLEIEK--ENEKVKNA 454
Query: 189 DLRAKETR 212
L K R
Sbjct: 455 ALLKKLQR 462
>SB_16585| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
Length = 387
Score = 27.1 bits (57), Expect = 4.3
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 120 IVYHQKMKVNLRNHYKNKK-YKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLE 296
IV M VN+RN + KK + + KET+AM +A E KIK+ ++ ++
Sbjct: 180 IVKTDLMIVNVRNGDREKKTVEQKEPTKKETKAM-EANKSAEQKIKKEDPKAKDTKEEIQ 238
Query: 297 SMPLK 311
++ L+
Sbjct: 239 AVKLR 243
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +3
Query: 60 GVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKH 239
GV S++ + R+ + + + HQ+ +RN ++NK + + A E M+ K
Sbjct: 1113 GVDSRIQQARLESENNFKEILETHQREMEEIRNSHENKMQEMAENHASELAQMKDIYEKQ 1172
Query: 240 EAKIKR 257
+ ++
Sbjct: 1173 NRESEK 1178
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 26.6 bits (56), Expect = 5.7
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Frame = +3
Query: 156 NHYKNKKYKPLDLRAKETRAMRKALT---KHEAKIKR-GKRSERN------LSSHLESMP 305
N +K +K P DL ++ +++R+ L H ++K G++ +R LSSH E +P
Sbjct: 386 NKWKEEKTIPADLE-EQLKSLREGLALLDSHREQLKEMGEQLKRLKSVSDLLSSHNEKLP 444
Query: 306 LKLE 317
KLE
Sbjct: 445 AKLE 448
>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
Length = 999
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 171 KKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLKLE 317
++ K ++ E R +K KH+ + ++GKR SS+ +S PL +
Sbjct: 948 QRMKEVEAAMSEIRKHKKKKKKHKHRDEKGKRKMSTSSSNYDS-PLMFD 995
>SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)
Length = 391
Score = 26.2 bits (55), Expect = 7.5
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +3
Query: 54 TGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLD-LRAKETRAMRKAL 230
T V S R K + +V HQ + L+ H K K R ++ R A+
Sbjct: 39 TKTVKQDTSSFRQSNKTMGPPKVVTHQPDEF-LKKHSKEPKLPDKKPFRYEDETKRRPAV 97
Query: 231 TKHEAKIKRGKRSERN 278
KH K G RS +N
Sbjct: 98 PKHSEKPLMGIRSNKN 113
>SB_35747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 171 KKYKPLDLRAKETRAMRKALTKHEAKIKRGKRS 269
++ +P +++ KET A R+ H I RG++S
Sbjct: 32 RELQPSEIQRKETSASREIPGLHHGTIARGEKS 64
>SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 207 TRAMRKALTKHEAKIKRGKRSERN--LSSHLESMPLKL 314
T +K L++ E K K KRSE+N ++ ++ P++L
Sbjct: 72 TEESKKMLSRFEKKCKENKRSEQNFCVARSVQHRPVEL 109
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 26.2 bits (55), Expect = 7.5
Identities = 24/103 (23%), Positives = 47/103 (45%)
Frame = +3
Query: 9 EELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPL 188
EE EL++++ K+ G ++ I + + +V QK K N+ N++ +
Sbjct: 921 EEASAELSSVK-HKLEGEISDLKQDIEELDATLKKVEEEGKQKDK-NIEQ--LNEELQQQ 976
Query: 189 DLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLKLE 317
D + + +K + +++ + E+N SHL LKLE
Sbjct: 977 DEAIAKLQKAKKQVEDERTELEDHLQEEQNKVSHLTKTKLKLE 1019
>SB_56585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +3
Query: 123 VYHQKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESM 302
++HQ+ NLR H+ + + + K+ +++ +E I K ER++ E
Sbjct: 10 LHHQRRISNLRGHFSDVPADDVPVFRKDESLLKEKREIYELWIDSLKCKERDMDELYEDE 69
Query: 303 PLKLE 317
K+E
Sbjct: 70 LTKIE 74
>SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 111 RVYIVYHQKMKVNLRNHYKNKKY 179
+VYIV H +V + HY N+ Y
Sbjct: 160 QVYIVKHHSNQVYIDKHYSNQVY 182
>SB_7603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 154 ETTTKTRNTSL*I*EPRRPVLCARLLLNTKQRSSEERD-QKEISL 285
E T +NT++ + RR +CAR L TK+ RD KE L
Sbjct: 147 EDTIHRKNTNVCVYIRRRLAMCARKLGRTKEAIKMMRDLMKEFPL 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,184,022
Number of Sequences: 59808
Number of extensions: 130464
Number of successful extensions: 431
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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