Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10978
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...   107   3e-24
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    30   0.41 
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    30   0.41 
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    30   0.41 
U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    28   2.2  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score =  107 bits (256), Expect = 3e-24
 Identities = 52/103 (50%), Positives = 71/103 (68%)
 Frame = +3

Query: 3   QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
           +++E KTEL  LRV+KVTGG ASKLSKIRVVRK IAR+  V +Q  K  LR  Y + KYK
Sbjct: 20  KLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYK 79

Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLK 311
           P+DLR K+TRA+R+ LT HE  ++  K+  ++ +  +    +K
Sbjct: 80  PIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVK 122


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 165 KNKKYKPLDLRAKETRAMRKALTKHE-AKIKRGKRSE 272
           K   ++ +D   KE R +RKA+TK E  KIK  K +E
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAE 304


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 165 KNKKYKPLDLRAKETRAMRKALTKHE-AKIKRGKRSE 272
           K   ++ +D   KE R +RKA+TK E  KIK  K +E
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAE 376


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 165 KNKKYKPLDLRAKETRAMRKALTKHE-AKIKRGKRSE 272
           K   ++ +D   KE R +RKA+TK E  KIK  K +E
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAE 376


>U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical
           protein T05A12.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 171 KKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSS--HLESM 302
           KKY P D+R KE +A+ KA+       +    S  + SS  H++++
Sbjct: 399 KKYLPGDVRYKEQQALMKAIAAAPGSSRNAPSSSNSQSSKNHIQAV 444


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 201 KETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLK 311
           KE  +++ AL    A++K  ++  +NLS  ++ +PLK
Sbjct: 639 KEISSLQTALEMKSAEMKELRQKNQNLSLQVDEIPLK 675


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 201 KETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLK 311
           KE  +++ AL    A++K  ++  +NLS  ++ +PLK
Sbjct: 707 KEISSLQTALEMKSAEMKELRQKNQNLSLQVDEIPLK 743


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
           protein R10F2.6 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 304 GIDSRWEERFLSDLFPRLIFASCLVRALRIARVSLAL 194
           GI  RW+E  L  +   + F  CL+ A R+  +S  L
Sbjct: 89  GIHPRWDEELLHAMPSTIQFEECLIIARRVKALSKKL 125


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 147 NLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSER 275
           NL N  +N+K K  D   K+ +  RK    H +  +RG+R+ +
Sbjct: 221 NLDNS-ENEKSKEKDKNRKKEKTERKRKRSHSSSDRRGRRTSK 262


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 120 IVYHQKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLES 299
           I+ H     N  +  K +K KPL++  +    M  ++TK  A +++ +   RN +    S
Sbjct: 110 ILKHGVEAKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNS 169

Query: 300 MPLKL 314
             L L
Sbjct: 170 RVLYL 174


>Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B6.4 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 105 IARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKETR-AMRKALTKHEAKIKRGKRSERN 278
           +A +      +  V+ +N  KNK  K     +K TR A +   ++  +K K  KRS ++
Sbjct: 58  VAAIAFCAKNRKTVHAKNKNKNKSSKSAK-SSKSTRGASKSGKSRRSSKAKHSKRSSKS 115


>Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical
           protein K01C8.9 protein.
          Length = 556

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 201 KETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLK 311
           +E   +R+   K  AKI R ++ + NL ++ ESM  K
Sbjct: 69  REKIKVRQEAAKEAAKIHRIEKRKNNLPANFESMVAK 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,001,885
Number of Sequences: 27780
Number of extensions: 95427
Number of successful extensions: 353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)