Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10978
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 111 1e-25
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 111 1e-25
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 109 5e-25
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 108 1e-24
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 107 2e-24
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 29 0.66
At4g14350.2 68417.m02211 protein kinase family protein contains ... 29 0.87
At4g14350.1 68417.m02210 protein kinase family protein contains ... 29 0.87
At4g36120.1 68417.m05141 expressed protein 27 4.6
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla... 27 4.6
At3g07360.2 68416.m00878 armadillo/beta-catenin repeat family pr... 27 4.6
At3g07360.1 68416.m00877 armadillo/beta-catenin repeat family pr... 27 4.6
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa... 26 6.1
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa... 26 6.1
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 26 6.1
At2g27700.1 68415.m03356 eukaryotic translation initiation facto... 26 6.1
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 26 8.1
At1g03080.1 68414.m00282 kinase interacting family protein simil... 26 8.1
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 111 bits (267), Expect = 1e-25
Identities = 55/104 (52%), Positives = 75/104 (72%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
Q++ELK EL +LRVAKVTGG +KLSKI+VVRK+IA+V V QK K LR YKNKK
Sbjct: 20 QLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLL 79
Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLKL 314
PLDLR K+TRA+R+ LTKH+A +K + ++++ + +K+
Sbjct: 80 PLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 111 bits (267), Expect = 1e-25
Identities = 55/104 (52%), Positives = 75/104 (72%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
Q++ELK EL +LRVAKVTGG +KLSKI+VVRK+IA+V V QK K LR YKNKK
Sbjct: 20 QLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLL 79
Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLKL 314
PLDLR K+TRA+R+ LTKH+A +K + ++++ + +K+
Sbjct: 80 PLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 109 bits (262), Expect = 5e-25
Identities = 55/104 (52%), Positives = 73/104 (70%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
Q++ELK EL LRVAKVTGG +KLSKI+VVRK+IA+V V QK K LR YKNKK
Sbjct: 20 QLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLL 79
Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLKL 314
PLDLR K+TRA+R+ LTKH+A +K + ++ + + +K+
Sbjct: 80 PLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 108 bits (259), Expect = 1e-24
Identities = 54/104 (51%), Positives = 72/104 (69%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
Q++E K EL LRVAKVTGG +KLSKI+VVRK+IA+V V QK K LR YKNKK
Sbjct: 20 QLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLL 79
Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLKL 314
PLDLR K+TRA+R+ LTKH+A +K + ++ + + +K+
Sbjct: 80 PLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 107 bits (258), Expect = 2e-24
Identities = 54/104 (51%), Positives = 72/104 (69%)
Frame = +3
Query: 3 QIEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYK 182
Q++E K EL LRVAKVTGG +KLSKI+VVRK+IA+V V QK K LR YKNKK
Sbjct: 20 QLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLL 79
Query: 183 PLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLKL 314
PLDLR K+TRA+R+ LTKH+A +K + ++ + + +K+
Sbjct: 80 PLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 29.5 bits (63), Expect = 0.66
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 69 SKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKETRAMRKALTKHEAK 248
S SK+R + K + ++ K RN K+ + +DL+ ++ A + L ++A
Sbjct: 73 SASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLKLEDLVAFKAKLEAYQAG 132
Query: 249 IKRGKRSERNLSS 287
+KR +LSS
Sbjct: 133 LKRKHVEMEDLSS 145
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 29.1 bits (62), Expect = 0.87
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 18 KTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKV-NLRNHYKNKKYKPLDL 194
K +N++ T G LS I + A A++YI H KM++ +L+ + +K L
Sbjct: 23 KEATSNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERRKMLEKKL 82
Query: 195 RAKE 206
A E
Sbjct: 83 AAAE 86
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 29.1 bits (62), Expect = 0.87
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 18 KTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKV-NLRNHYKNKKYKPLDL 194
K +N++ T G LS I + A A++YI H KM++ +L+ + +K L
Sbjct: 23 KEATSNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERRKMLEKKL 82
Query: 195 RAKE 206
A E
Sbjct: 83 AAAE 86
>At4g36120.1 68417.m05141 expressed protein
Length = 981
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 171 KKYKPLDLRAKETRAMRKALTKHEAKIKRGKRSERN 278
+ YK LDL AKE A K+L + +++ +E++
Sbjct: 808 ESYKSLDLHAKELEAKVKSLEEETKRLEMAFTTEKH 843
>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1424
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 6 IEELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKN 170
++EL+TE RV GG+ + R+AI + +K+ L +H K+
Sbjct: 81 LDELQTEALRRRVVAEAGGLGGLFQNLMAGREAIQKKIEPKMEKVVRLLEHHVKH 135
>At3g07360.2 68416.m00878 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 325
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 40 GLLKLLVELLQNCPRSVL*EKLSHVFTLCITRR*RS 147
G+LK L++LL+ + + + +FTLCI RS
Sbjct: 164 GILKPLIDLLEEGNPLAIKDVAAAIFTLCIAHENRS 199
>At3g07360.1 68416.m00877 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 460
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 40 GLLKLLVELLQNCPRSVL*EKLSHVFTLCITRR*RS 147
G+LK L++LL+ + + + +FTLCI RS
Sbjct: 299 GILKPLIDLLEEGNPLAIKDVAAAIFTLCIAHENRS 334
>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 186 LDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLES 299
LD+ + E+ ++ + E + RGK E +S H ES
Sbjct: 106 LDMDSSESSSVNEDSPTSERSLPRGKTKESTISVHSES 143
>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 186 LDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLES 299
LD+ + E+ ++ + E + RGK E +S H ES
Sbjct: 106 LDMDSSESSSVNEDSPTSERSLPRGKTKESTISVHSES 143
>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
family protein similar to 13S condensin XCAP-D2 subunit
[Xenopus laevis] GI:3764087; contains Pfam profile
PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
Length = 1439
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 9 EELKTELTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKP 185
EE +T+ N +V +T +KLS+ IA +VY + +R K KK KP
Sbjct: 809 EEAQTDTENNKVDILTPVQVAKLSRFLFAVSHIAMNQLVYIESCIQKIRRQ-KTKKDKP 866
>At2g27700.1 68415.m03356 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|P39730 Translation initiation factor IF-2
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00009: Elongation factor Tu GTP binding domain,
PF03144: Elongation factor Tu domain 2
Length = 479
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 110 TCLHCVSPEDEGQS*KPLQKQEIQAF--RFKSQGDPCYAQGS 229
T LH V P+D+ ++ K L +++ + R G+ Y Q S
Sbjct: 348 TALHVVGPDDDIEAIKELVMEDVNSVLSRIDKSGEGVYIQAS 389
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 26 INKSSGC*SYWWSCFKTVQDPC 91
+N +SG Y W CF+T PC
Sbjct: 84 LNPTSG--QYHWFCFQTTVSPC 103
>At1g03080.1 68414.m00282 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 25.8 bits (54), Expect = 8.1
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +3
Query: 6 IEELKTELTNLRVAKV--TGGVAS-KLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 176
+E+ EL + R A V +A+ K+ K + + +A+ + I+ ++K +++ K
Sbjct: 1186 LEKSNAELLSARSANVHLEHEIANVKVQKEKELLEAMLMISIMQNEKSELS-------KA 1238
Query: 177 YKPLDLRAKETRAMRKALTKHEAKIKRGKRSERNLSSHLESMPLKLE 317
+ L+ R KE +A+ + K +++ + +SH LKLE
Sbjct: 1239 VEGLECRYKEAKAIEEDRDKQVLRLRGDYDEQVKKNSHSNEANLKLE 1285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,727,301
Number of Sequences: 28952
Number of extensions: 91014
Number of successful extensions: 303
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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