Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10975
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding... 37 0.002
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 32 0.079
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 30 0.24
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 30 0.32
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 5.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 5.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 6.9
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 25 6.9
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 6.9
>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 279
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +2
Query: 254 ESTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
++T TY I+D TG + W +A+ ++ + Y+++YGN+K G + +
Sbjct: 92 QTTNTTYQIEDGTGMIEVRHWEHIDALS-------ELATDTYVRVYGNIKIFSGKIYIAS 144
Query: 434 FKIMPVTDVNIITCHYFQCI 493
I + D N + H+ + I
Sbjct: 145 QYIRTIKDHNEVHFHFLEAI 164
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 31.9 bits (69), Expect = 0.079
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 STKITYTIQDITGRMRAVLWLDQE-AMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
+T I + +Q + R +A+ + ++ A ++E +S + D YG +K V
Sbjct: 1001 NTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMD---AYGTLKPVNVGSVKAV 1057
Query: 434 FKIMPVTDVNIITCHYFQCIH 496
++M TDV I++ HY IH
Sbjct: 1058 LELMERTDVPILSMHYAAYIH 1078
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 30.3 bits (65), Expect = 0.24
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 3 KSSTNNFDLYFKTMWNDDPSGGGFLNTTNQFGNTATPKKT 122
+ S NN + +D PSGG F N FGN T ++T
Sbjct: 993 EDSFNNASAAHSSKESDIPSGGVFTKYRNHFGNLMTSEET 1032
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = -3
Query: 221 HYLNFCTPYFHTFFSRMQS-----LPDDYRCCP 138
HYL+ C+PY +F R++S LPD + CP
Sbjct: 227 HYLSDCSPYTGSFVQRIRSILTEPLPDISKSCP 259
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 553 LGHLEYLFPSLSQLPLYVIMNALKVVTCNNVD-ISNWHYLKCHEYF 419
+ +LE +PSL Q+P ++I ++ C + + ++ L +EY+
Sbjct: 595 INYLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYW 640
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 416 TKVLMAFKI--MPVTDVNIITCHYFQCIHNNIQWKLAQRRKKIFKMSQLAT 562
T ++M KI + ++ + I H +Q IH ++ W L Q + + Q+ T
Sbjct: 1582 TGIMMHGKIPTLKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESLQIET 1632
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 477 TTFSAFIITYNGSWLKE 527
TTF +F+I+YN S++K+
Sbjct: 1388 TTFYSFLISYNDSFIKK 1404
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 209 FCTPYFHTFFSRMQSLPDDYRCCPCRSTTRFLRCCSI 99
FC+ Y FS Q + D+R ++T R + C +
Sbjct: 173 FCSSYQSQVFSPGQKIVFDFRSYNIKATVRTISCVDL 209
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 74 EATSRRIIIPHCFKVE 27
EA S+ +IP CFK+E
Sbjct: 8 EADSKPAVIPQCFKIE 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,755
Number of Sequences: 5004
Number of extensions: 54062
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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