Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10975
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1313 - 35658599-35658683,35659231-35659313,35659394-356594... 58 4e-09
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 47 1e-05
02_05_0049 - 25423260-25423344,25423415-25423483,25424143-254242... 38 0.005
01_06_1618 - 38681729-38683989,38685577-38685796 30 1.3
11_06_0510 + 24420402-24422582 29 2.3
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 4.1
01_01_0381 - 2961422-2963917 29 4.1
11_06_0291 + 22008412-22012284 28 5.4
11_01_0706 + 5811722-5814025 28 7.1
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190... 28 7.1
>02_05_1313 -
35658599-35658683,35659231-35659313,35659394-35659489,
35659615-35659693,35659775-35659852,35659989-35660030,
35660435-35660532,35660628-35660747,35660840-35660926
Length = 255
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/84 (33%), Positives = 48/84 (57%)
Frame = +2
Query: 257 STKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
+T +++TI D TGR+ + W++ A E + VQ Y+ + G++K + K AF
Sbjct: 83 NTDVSFTIDDGTGRLDFIRWVNDGADSAETAA---VQNGMYVSVIGSLKGLQERKRATAF 139
Query: 437 KIMPVTDVNIITCHYFQCIHNNIQ 508
I PVTD N +T H+ QC+ +++
Sbjct: 140 AIRPVTDYNEVTLHFIQCVRMHLE 163
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/86 (24%), Positives = 47/86 (54%)
Frame = +2
Query: 251 NESTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLM 430
+ T + +T+ D TG++ V W+ ++ + DTS +Q Y+++ N+ + K +
Sbjct: 97 SRDTDVCFTLDDSTGKIPLVRWITDQS-DTRDTS--YIQEGVYVKVQVNLMGFQAKKQGL 153
Query: 431 AFKIMPVTDVNIITCHYFQCIHNNIQ 508
A I P+ + N + H+ +C+H +++
Sbjct: 154 ARSIRPINNFNEVVLHFIECMHVHLE 179
>02_05_0049 -
25423260-25423344,25423415-25423483,25424143-25424231,
25424315-25424407,25424516-25424594,25425557-25425657,
25425864-25425944,25426369-25426740
Length = 322
Score = 38.3 bits (85), Expect = 0.005
Identities = 12/45 (26%), Positives = 29/45 (64%)
Frame = +2
Query: 374 DYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITCHYFQCIHNNIQ 508
DY+ + G +K +G + ++A+ + +T+ N +T H+ C+H +++
Sbjct: 162 DYVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLE 206
>01_06_1618 - 38681729-38683989,38685577-38685796
Length = 826
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 266 ITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDY 379
+T + D+TG+++ + W+D A V S PK Q + Y
Sbjct: 283 LTRFVVDVTGQIKFMTWVDSAAQWVLFWSEPKAQCDVY 320
>11_06_0510 + 24420402-24422582
Length = 726
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 185 FFSRMQSLPDDYRCCPCRSTTRFLRC-CSIS 96
F++ + DD CC C S+++ LRC CS S
Sbjct: 507 FYANHPADKDDDGCCSCSSSSKCLRCLCSSS 537
>01_05_0553 +
23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -1
Query: 574 LQAACC*LGHLEYLFPSLSQLPLYVIMNALKVVTCNNVDISNWHYLKCHEYFCPFIRFHI 395
LQ A + L P ++ L ++ ++ N+ D W C EY C + FH+
Sbjct: 375 LQEAANAISMFPLLQPLVAVLGWDILKGSMHKKLVNDCDSFYWQ-TSCEEYLCDLLCFHL 433
Query: 394 AVNLYV 377
V +V
Sbjct: 434 DVACFV 439
>01_01_0381 - 2961422-2963917
Length = 831
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 251 NESTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDY 379
NE+ +T D+ GR + +WLD + S+PKVQ + Y
Sbjct: 268 NEAV-VTRNFIDVDGRNKQQVWLDSSQSWLTLYSNPKVQCDVY 309
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 628 DENLSHSLKR-FQ*FQPLNLQAACC*LGHLEYLFPSLSQLPLYVIMNALKVVTCNNVDIS 452
+ LSH L R F F L L+++ ++ F SLSQ ++ L + C +
Sbjct: 909 ETRLSHHLARHFSIFNDLRLRSS----DRIQTFFQSLSQSSRVSLLKVLDLEGCQCFGVK 964
Query: 451 NWHYLK 434
N YLK
Sbjct: 965 NQRYLK 970
>11_01_0706 + 5811722-5814025
Length = 767
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 428 MAFKIMPVTDVNIITCHYFQCIHNNIQWKLAQRRKKIFKMSQLATCCLQIQW 583
M + +P+ N+ HYF NNI + + K+ M + ++I W
Sbjct: 483 MFYGHIPIKITNLKNLHYFSLAANNISGAIPRCLSKLTMMIGKQSTIIEIDW 534
>02_01_0284 +
1907249-1907665,1907816-1907859,1909508-1909546,
1909791-1910112,1910803-1910892,1911541-1911609,
1911969-1912074,1912146-1912234,1912349-1912461,
1912555-1912657
Length = 463
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = +2
Query: 236 NQEH*NESTKITYTIQDITGR------MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGN 397
N + T + Y + I GR A L L+ + TSSP Q +D ++YG+
Sbjct: 201 NSRRCRKFTTMAYPVSPIAGRRSNWRSFAASLNLEDGPASSDSTSSPSEQTSDGGEVYGD 260
Query: 398 VKTNKGTKVL 427
N ++ L
Sbjct: 261 PSENLNSRKL 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,430
Number of Sequences: 37544
Number of extensions: 328834
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -