Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10975
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06) 30 1.8
SB_30146| Best HMM Match : Ank (HMM E-Value=1.1) 29 2.4
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9) 29 2.4
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9) 29 4.1
SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058) 29 4.1
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_35373| Best HMM Match : Phage_T7_Capsid (HMM E-Value=4.6) 28 7.2
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 28 7.2
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_3452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 254 ESTKITYTIQD---ITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKV 424
+ +KIT TI D ITG + + W++++ + + T P V +Y ++ V +
Sbjct: 5 QQSKITKTITDAAVITGLVAGIGWVERKVLREDFTKDPSVNAMNYARMTAAVAAQSRERG 64
Query: 425 LMAFKIMPVTD 457
+A + TD
Sbjct: 65 SLAKQNFTDTD 75
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 254 ESTKITYTIQD---ITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQI 388
+ +KIT TI D ITG + + W++++ + + T P V +Y ++
Sbjct: 1674 QQSKITKTITDAAVITGLVAGIGWVERKVLREDFTKDPSVNAMNYARM 1721
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 191 HTFFSRMQSLPDDYRCCPCRSTTRFLRCCSISKLIC 84
HTFF R P + C T F+ C I +L+C
Sbjct: 2001 HTFFDRHSKFPPPFFKSLCTKGTFFVAPCGIVRLMC 2036
>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
Length = 553
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/85 (22%), Positives = 44/85 (51%)
Frame = +2
Query: 173 FWRRRCENMGYRNSNSVNSCKNQEH*NESTKITYTIQDITGRMRAVLWLDQEAMEVEDTS 352
+WR+ + YR+++SVN+C+ + K T +++ T + + +D A+ + D
Sbjct: 398 YWRKLLTLLCYRDNHSVNTCR------QGWKTTSSLEPTTSATTSTVQVD--AISIGD-- 447
Query: 353 SPKVQVNDYIQIYGNVKTNKGTKVL 427
K +V++ ++ N+ K ++ L
Sbjct: 448 DMKEEVDENVRSVNNITCQKSSRKL 472
>SB_30146| Best HMM Match : Ank (HMM E-Value=1.1)
Length = 383
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 275 TIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKG 415
T++ GR+R + D E +++ED +S + + DY+ + G VK KG
Sbjct: 54 TLESKRGRVRTINRSDLERVKLEDRTSNERALFDYV-LTGRVKDLKG 99
>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -3
Query: 218 YLNFCTPY-FHTFFSRMQS-LPDDYRCCPCRSTTRFLRCCSISKLICGVKEAT 66
Y+ T Y +H+F S S +P C P + C + +L CG K T
Sbjct: 323 YMKMTTDYLYHSFSSNKHSGIPSKVVCQPSTGEGAKVHPCEVKRLDCGCKRNT 375
>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
Length = 842
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 254 ESTKITYTIQD---ITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQI 388
E +KIT TI D ITG + + W+ ++ + + T P +Y ++
Sbjct: 342 EQSKITKTITDAAVITGLVAGIGWIGRKVLREDFTKDPSANAMNYAKM 389
>SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Frame = +2
Query: 296 RMRAVLWLDQEAMEVEDTSSPKVQVND----YIQIYGNVKTNKGTKVLMAFKIMPVTDVN 463
R R L+ E +E E +V+ D Y+ + N + +F+I +
Sbjct: 267 RKREECPLNGECLEKEIVYQARVETGDKCKTYVGLTANEFKTRWRNHASSFRIESRRNET 326
Query: 464 IITCHYFQC----IHNNIQWKLAQRRKKIFKMSQLATCCLQIQWLELLKP 601
++ H +Q I+ + WK+ R K K S+ C + +++KP
Sbjct: 327 ELSKHIWQLKDRRINYTVSWKIIARAKAYSKESKRCNLCTTEKHFKIIKP 376
>SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058)
Length = 874
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 254 ESTKITYTIQD---ITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTK- 421
+ +KIT TI D ITG + + WL ++ + + T P +Y ++ V K
Sbjct: 805 QQSKITKTITDAAVITGLVAGIGWLGRKVLHEDFTKDPSANAMNYAKMTAAVAGAVALKG 864
Query: 422 VLMAFKIMPV 451
L KI+P+
Sbjct: 865 YLEDQKILPM 874
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 475 TCNNVDISNWHYLKCHEYFC 416
TCN +D + W YLK H C
Sbjct: 1027 TCNLIDYATWTYLKDHRVDC 1046
>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1642
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 275 TIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKG 415
T++ GR+R + D E +++ED +S + + DY+ + G VK KG
Sbjct: 14 TLESKRGRVRTLDRSDLERVKLEDRTSNERALFDYV-LTGRVKDLKG 59
>SB_35373| Best HMM Match : Phage_T7_Capsid (HMM E-Value=4.6)
Length = 414
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 16 TILTSTLKQCGMMIRLEVASLTPQINLEILQHL 114
++L T+++C ++ + ASL P + ILQ+L
Sbjct: 43 SVLRETIRKCAGVVTVSTASLKPWLVCNILQNL 75
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 182 RRCENMGYRNSNSVNSCKNQEH*NESTKITYTI 280
R+C GY S C+ + NES KIT +
Sbjct: 242 RKCAGQGYIISTPCRKCRGKGRVNESRKITVPV 274
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 161 PDDYRCCPCRSTTRFLRCCSISKLIC 84
PDDY C C R CC I +C
Sbjct: 40 PDDYTC--CLMPNRMYGCCPIPNAVC 63
>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -3
Query: 200 PYFHTFFSRMQSLPDDYRCCPCRSTTRFLRCCSIS 96
P FF RM P D C ++ L C+IS
Sbjct: 307 PLLRNFFGRMTRAPQDSSCLSSNTSNISLHFCTIS 341
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,400,548
Number of Sequences: 59808
Number of extensions: 394480
Number of successful extensions: 1116
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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