Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10975
(634 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05249-1|AAA36560.1| 270|Homo sapiens protein ( Human replicati... 50 7e-06
DQ001128-1|AAX84514.1| 270|Homo sapiens replication protein A2,... 50 7e-06
CR450348-1|CAG29344.1| 270|Homo sapiens RPA2 protein. 50 7e-06
BC021257-1|AAH21257.1| 270|Homo sapiens replication protein A2,... 50 7e-06
BC012157-1|AAH12157.1| 270|Homo sapiens replication protein A2,... 50 7e-06
BC001630-1|AAH01630.1| 270|Homo sapiens replication protein A2,... 50 7e-06
AL109927-12|CAI21778.1| 278|Homo sapiens replication protein A2... 50 7e-06
AL109927-11|CAI21777.1| 270|Homo sapiens replication protein A2... 50 7e-06
AL109927-10|CAI21776.1| 179|Homo sapiens replication protein A2... 50 7e-06
AL109927-9|CAI21775.1| 358|Homo sapiens replication protein A2,... 50 7e-06
Z86061-1|CAI42256.1| 261|Homo sapiens replication protein A4, 3... 41 0.003
U24186-1|AAB08488.2| 261|Homo sapiens replication protein A com... 41 0.003
BC104014-1|AAI04015.1| 261|Homo sapiens replication protein A4,... 41 0.003
BC104013-1|AAI04014.1| 261|Homo sapiens replication protein A4,... 41 0.003
BC069824-1|AAH69824.1| 261|Homo sapiens replication protein A4,... 41 0.003
BC069808-1|AAH69808.1| 261|Homo sapiens replication protein A4,... 41 0.003
BC069791-1|AAH69791.1| 261|Homo sapiens replication protein A4,... 41 0.003
AF494047-1|AAM09569.1| 261|Homo sapiens replication protein A c... 41 0.003
U81494-1|AAR00926.1| 116|Homo sapiens anti-CD4 Ig heavy chain V... 30 5.9
U92484-1|AAR00504.1| 128|Homo sapiens immunoglobulin heavy chai... 30 7.8
>J05249-1|AAA36560.1| 270|Homo sapiens protein ( Human replication
protein A 32-kDa subunit mRNA, complete cds. ).
Length = 270
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 88 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 144
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 145 KIMPLEDMNEFTTHILEVIN 164
>DQ001128-1|AAX84514.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 88 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 144
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 145 KIMPLEDMNEFTTHILEVIN 164
>CR450348-1|CAG29344.1| 270|Homo sapiens RPA2 protein.
Length = 270
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 88 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 144
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 145 KIMPLEDMNEFTTHILEVIN 164
>BC021257-1|AAH21257.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 88 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 144
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 145 KIMPLEDMNEFTTHILEVIN 164
>BC012157-1|AAH12157.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 88 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 144
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 145 KIMPLEDMNEFTTHILEVIN 164
>BC001630-1|AAH01630.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 88 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 144
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 145 KIMPLEDMNEFTTHILEVIN 164
>AL109927-12|CAI21778.1| 278|Homo sapiens replication protein A2,
32kDa protein.
Length = 278
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 96 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 152
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 153 KIMPLEDMNEFTTHILEVIN 172
>AL109927-11|CAI21777.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 88 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 144
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 145 KIMPLEDMNEFTTHILEVIN 164
>AL109927-10|CAI21776.1| 179|Homo sapiens replication protein A2,
32kDa protein.
Length = 179
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 92 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 148
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 149 KIMPLEDMNEFTTHILEVIN 168
>AL109927-9|CAI21775.1| 358|Homo sapiens replication protein A2,
32kDa protein.
Length = 358
Score = 50.0 bits (114), Expect = 7e-06
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 TKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAF 436
T I Y I D+T M W+D + E+T P Y+++ G++++ + K L+AF
Sbjct: 176 TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP---ETYVKVAGHLRSFQNKKSLVAF 232
Query: 437 KIMPVTDVNIITCHYFQCIH 496
KIMP+ D+N T H + I+
Sbjct: 233 KIMPLEDMNEFTTHILEVIN 252
>Z86061-1|CAI42256.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 41.1 bits (92), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 257 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 434 FKIMPVTDVNIITCHYFQCIHNNIQWKLAQR 526
KI + D+N T H + ++ ++ A+R
Sbjct: 143 LKIHVLEDMNEFTVHILETVNAHMMLDKARR 173
>U24186-1|AAB08488.2| 261|Homo sapiens replication protein A
complex 34 kd subunit homolog Rpa4 protein.
Length = 261
Score = 41.1 bits (92), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 257 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 434 FKIMPVTDVNIITCHYFQCIHNNIQWKLAQR 526
KI + D+N T H + ++ ++ A+R
Sbjct: 143 LKIHVLEDMNEFTVHILETVNAHMMLDKARR 173
>BC104014-1|AAI04015.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 41.1 bits (92), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 257 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 434 FKIMPVTDVNIITCHYFQCIHNNIQWKLAQR 526
KI + D+N T H + ++ ++ A+R
Sbjct: 143 LKIHVLEDMNEFTVHILETVNAHMMLDKARR 173
>BC104013-1|AAI04014.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 41.1 bits (92), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 257 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 434 FKIMPVTDVNIITCHYFQCIHNNIQWKLAQR 526
KI + D+N T H + ++ ++ A+R
Sbjct: 143 LKIHVLEDMNEFTVHILETVNAHMMLDKARR 173
>BC069824-1|AAH69824.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 41.1 bits (92), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 257 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 434 FKIMPVTDVNIITCHYFQCIHNNIQWKLAQR 526
KI + D+N T H + ++ ++ A+R
Sbjct: 143 LKIHVLEDMNEFTVHILETVNAHMMLDKARR 173
>BC069808-1|AAH69808.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 41.1 bits (92), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 257 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 434 FKIMPVTDVNIITCHYFQCIHNNIQWKLAQR 526
KI + D+N T H + ++ ++ A+R
Sbjct: 143 LKIHVLEDMNEFTVHILETVNAHMMLDKARR 173
>BC069791-1|AAH69791.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 41.1 bits (92), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 257 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 434 FKIMPVTDVNIITCHYFQCIHNNIQWKLAQR 526
KI + D+N T H + ++ ++ A+R
Sbjct: 143 LKIHVLEDMNEFTVHILETVNAHMMLDKARR 173
>AF494047-1|AAM09569.1| 261|Homo sapiens replication protein A
complex 34 kDa subunit RPA4 protein.
Length = 261
Score = 41.1 bits (92), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 257 STKITYTIQDITGR-MRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
S I Y I D+T + + A W +E +V+ + V V Y++++G +K GTK L
Sbjct: 87 SNHICYKIDDMTAKPIEARQWFGRE--KVKQVTPLSVGV--YVKVFGILKCPTGTKSLEV 142
Query: 434 FKIMPVTDVNIITCHYFQCIHNNIQWKLAQR 526
KI + D+N T H + ++ ++ A+R
Sbjct: 143 LKIHVLEDMNEFTVHILETVNAHMMLDKARR 173
>U81494-1|AAR00926.1| 116|Homo sapiens anti-CD4 Ig heavy chain
V-region protein.
Length = 116
Score = 30.3 bits (65), Expect = 5.9
Identities = 23/97 (23%), Positives = 44/97 (45%)
Frame = +2
Query: 143 STYSHQASFAFWRRRCENMGYRNSNSVNSCKNQEH*NESTKITYTIQDITGRMRAVLWLD 322
S ++ A W R+ G +S++S + ++S K +TI + L++
Sbjct: 22 SGFTFSAYSMNWVRQSPGKGLEWVSSISSSADSIFYSDSVKGRFTIS--RDNSKNTLYMQ 79
Query: 323 QEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 433
+ + VEDT DY+ ++G KGT V+++
Sbjct: 80 MDNLRVEDTGVYYCAGGDYMDVWG-----KGTTVIVS 111
>U92484-1|AAR00504.1| 128|Homo sapiens immunoglobulin heavy chain,
VH region protein.
Length = 128
Score = 29.9 bits (64), Expect = 7.8
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +2
Query: 176 WRRRCENMGYRNSNSVNSCKNQEH*NESTKITYTIQDITGRMRAVLWLDQEAMEVEDTSS 355
W R+ G +S++S + ++S K +TI + L++ + + VEDT
Sbjct: 33 WVRQSPGKGLEWVSSISSSADSIFYSDSVKGRFTIS--RDNSKNTLYMQMDNLRVEDTGV 90
Query: 356 PKVQVNDYIQIYGNVKTNKGTKVLMA 433
DY+ ++G KGT V+++
Sbjct: 91 YYCAGGDYMDVWG-----KGTTVIVS 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,190,488
Number of Sequences: 237096
Number of extensions: 1857608
Number of successful extensions: 4010
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4010
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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