Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10975
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82070-7|CAB04909.1|  321|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z82070-6|CAB04910.1|  321|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine rece...    27   8.4  

>Z82070-7|CAB04909.1|  321|Caenorhabditis elegans Hypothetical
           protein W04E12.8 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 499 IMNALKVVTCNNVDISNWHYLKCHEYFCPFIRFHIA 392
           +  A    TCN   I N H+ +C++YF    +F  A
Sbjct: 11  LFGATAAQTCNTGGIYNAHFNRCYQYFTAPAQFEFA 46


>Z82070-6|CAB04910.1|  321|Caenorhabditis elegans Hypothetical
           protein W04E12.6 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 514 LPLYVIMNALKVVTCNNVDISNWHYLKCHEYFCPFIRFHIA 392
           L L+ ++ A    TCN   I N  + +C++YF    +F  A
Sbjct: 6   LLLFGLLGAATAQTCNTGGIYNEQFNRCYQYFTAPAQFSFA 46


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 167 SLPDDYRCCPCRSTTRFLRCCSISKLIC 84
           S P  Y C P    ++FL C   S LIC
Sbjct: 318 SCPIGYSCAPSNQVSQFLCCRLASSLIC 345


>Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical
           protein F41D3.3 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = -3

Query: 260 CFHSNAPDSCNY*HYLNFCTPYFHTFFSRMQSLPDDYRC-----CPCRSTTRFLRCCSIS 96
           C   + P S  Y H+   C P   +FF R  SL   Y C     C   S    + C +  
Sbjct: 10  CPVCSLPCSMRYSHFGGICCPACASFFRRTVSLNIRYLCKKQNNCSGISKKYHIVCRACR 69

Query: 95  KLICGVKEATSRRIIIPH 42
              C +K+A  +R ++ H
Sbjct: 70  YEKC-IKKAGMKRSLVQH 86


>U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 3 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 381 YKFTAM*KRIKGQKYSWHLR*CQLLMSTLLHVTTFSAFIITYNGSWLKEGKRYSR 545
           YK T M KRIK  + +  +    + +  LL   T S F       WL +   Y R
Sbjct: 211 YKMTTMKKRIKASERALCIAAALISVGFLLEAITQSFFAFFKEAPWLLDVMNYLR 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,401
Number of Sequences: 27780
Number of extensions: 303989
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)