Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10975
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24490.1 68415.m02926 replication protein, putative similar t...    60   9e-10
At3g02920.1 68416.m00287 replication protein-related similar to ...    50   2e-06
At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr...    31   0.48 
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ...    31   0.64 
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa...    30   1.1  
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida...    28   5.9  

>At2g24490.1 68415.m02926 replication protein, putative similar to
           replication protein A 30kDa [Oryza sativa (japonica
           cultivar-group)] GI:13516746; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 279

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 29/91 (31%), Positives = 52/91 (57%)
 Frame = +2

Query: 260 TKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAFK 439
           T++ +T+ D TGR+    W+  E  +  +  S  V+   Y+++ G++KT +G   L+ F 
Sbjct: 88  TEVRFTLDDGTGRIDCKRWVS-ETFDAREMES--VRDGTYVRLSGHLKTFQGKTQLLVFS 144

Query: 440 IMPVTDVNIITCHYFQCIHNNIQWKLAQRRK 532
           + P+ D N +T HY +CIH   Q   +QR++
Sbjct: 145 VRPIMDFNEVTFHYIECIHFYSQNSESQRQQ 175


>At3g02920.1 68416.m00287 replication protein-related similar to
           replication protein A 30kDa [Oryza sativa (japonica
           cultivar-group)] GI:13516746; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 278

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/82 (28%), Positives = 46/82 (56%)
 Frame = +2

Query: 251 NESTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLM 430
           N  T++ + + D TG +  V W      E E+  + K+ +  Y++++G++K  +G + + 
Sbjct: 81  NRITQVDFVVDDGTGWVDCVRWCHAR-QETEEMEAVKLGM--YVRLHGHLKIFQGKRSVN 137

Query: 431 AFKIMPVTDVNIITCHYFQCIH 496
            F + PVTD N I  H+ +C++
Sbjct: 138 VFSVRPVTDFNEIVHHFTECMY 159


>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 458

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 27  LYFKTMWNDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALH 173
           LYF+   N++   GGF N   +F N  T K  G R +RT+P    + +H
Sbjct: 213 LYFEGANNNN---GGFENEILEFNNGVTRKGRGSRKSRTSPTERERRVH 258


>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 659

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 580 LNLQAACC*LGHLE-YLFPSLSQLPLYVIMNALKVVTCNNVDISNWHYLKCHEYFCPFI 407
           + L   CC +  LE ++ PS    PLY I   ++ V CN  ++S    L+C E  C F+
Sbjct: 472 MKLDVICCSV--LEPFVHPSHPDHPLYYISPEMEEV-CNGCNMSGTRMLRCIEDGCGFV 527


>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
           family protein similar to BRCA1-associated protein 2
           [Homo sapiens] GI:3252872; contains Pfam profiles
           PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
           Zn-finger in ubiquitin-hydrolases and other protein
          Length = 461

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 170 QSLPDDYRCCPCRSTTRFLRCCSISKLICG-VKEATSRR--IIIPHCFKVEVK 21
           Q  P++  CC C++T     C     + CG  KE  +RR      HC+ +E++
Sbjct: 210 QQQPENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELE 262


>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
           family protein similar to  laccase [Pinus
           taeda][GI:13661197]
          Length = 565

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 3   KSSTNNFDLYFKTM--WNDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHS 176
           K+ T++F  Y+ T+  +ND  +  GF        +   P +  RR   T  I +R    +
Sbjct: 307 KAKTSSFSGYYPTLPFYNDTSAAFGFFTKIKCLFSGQVPVQISRRIITTVSINLRMCPQN 366

Query: 177 GEEG 188
             EG
Sbjct: 367 SCEG 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,555
Number of Sequences: 28952
Number of extensions: 275488
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)