Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10971
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 89 4e-19
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 89 4e-19
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 0.74
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 28 0.74
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 3.0
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 4.0
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 5.2
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 5.2
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 5.2
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 6.9
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 6.9
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar... 24 9.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 24 9.1
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 24 9.1
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 24 9.1
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 24 9.1
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 24 9.1
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 24 9.1
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 88.6 bits (210), Expect = 4e-19
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = +1
Query: 4 DGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYI 183
DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I
Sbjct: 168 DGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLI 227
Query: 184 KLGVTADAIEAIYKKAHEAIRAD 252
G+ +D +E IY +A+ IR D
Sbjct: 228 ADGIESDQLEDIYAEAYAKIRED 250
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 88.6 bits (210), Expect = 4e-19
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = +1
Query: 4 DGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYI 183
DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I
Sbjct: 168 DGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLI 227
Query: 184 KLGVTADAIEAIYKKAHEAIRAD 252
G+ +D +E IY +A+ IR D
Sbjct: 228 ADGIESDQLEDIYAEAYAKIRED 250
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.9 bits (59), Expect = 0.74
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 230 PMKPSVRILPQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSGGSLNA 406
PM PS RI Q+E KE Q + +Q Q + ++Q Q++E L Q+ + +NA
Sbjct: 105 PMMPSSRIPFQQE--KEAAMQQQQQQQQQQQL--YQRQMQSREALLSQQIPPNQIGINA 159
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 27.9 bits (59), Expect = 0.74
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 243 PCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQA 392
P S KK+LKK K+KR R A + +Q+K +IK+++ +A
Sbjct: 422 PKPSKEMKKKLKKSPPKRKRITTR----ASYDRQKEQRKKEYIKKVKKEA 467
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 248 RILPQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQE 376
R+ +EER K+ L + E E+ + + E+K + ++ L QE
Sbjct: 129 RLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQE 171
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 115 AEYMRSLEQDDEDSFKRQFSKYIK 186
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRK 317
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 258 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 365
HKKK+ + S K+K + K ++K ++K K S
Sbjct: 203 HKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPES 238
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 252 SSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 365
SSHK E K+ K+K N RK LAE K + + S
Sbjct: 21 SSHKVTENAKKRKHSKEKPQNSRKRQLAEEKKSLFENSDS 60
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 6.9
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 267 KELKKDSVKQKRWNKRKLTLAER--KNRIKQKKASFIKRLQAQAEA 398
+E + DS + ++ + + AE+ KNR +KKAS ++ LQ EA
Sbjct: 553 REDENDSEQLDHFDMKSILKAEKFKKNRKLKKKASNLEGLQEGFEA 598
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 88 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAI 210
R + GL VAEY R +E D F ++ + G A+
Sbjct: 277 RVALTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSAL 317
>SPAC8C9.10c |||ribosome biogenesis protein
Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 300 RWNKRKLTLAERKNRIKQK 356
+W ++K TL E+K R K K
Sbjct: 35 QWKQKKSTLEEKKERRKMK 53
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.2 bits (50), Expect = 9.1
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRK-LTLAERKNRIKQKKASFIKRLQAQ 389
+++ELKK K+K+ +K+K L LA+ + R ++++A + AQ
Sbjct: 584 QERELKKIREKEKKRDKKKQLKLAKEEER-QRREAERLAEQAAQ 626
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 258 HKKKELKKDSVKQKRWNKRKLTLAERKN 341
H++K+ ++ V++K KRK +R+N
Sbjct: 526 HQQKQARRRRVRRKHAEKRKQMAEKRRN 553
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 269 RVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSGGSLNAL 409
++++R ++ L++ A++ + + ++K LH GG+L +L
Sbjct: 450 QIEKRANESNNLQREIADLSEQIVELESKRNDLHSALLEMGGNLTSL 496
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 356
KK + +K+ ++Q+R KRK L + ++K+K
Sbjct: 93 KKMKREKEILRQQR-QKRKSELTQLSQKVKEK 123
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 35 KDSLAMMQNPKSSMLKYTGLTSLVCML 115
KDSL MM SS+L GLT+ ++
Sbjct: 788 KDSLGMMHFLTSSLLNEQGLTAFEVLM 814
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +3
Query: 267 KELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 377
++L K S+++K K+K + A ++ + +KKA +++
Sbjct: 166 EQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQ 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,163
Number of Sequences: 5004
Number of extensions: 27847
Number of successful extensions: 148
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -