Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10971
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 107 5e-24
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 105 1e-23
12_02_0442 - 19118536-19119222 31 0.31
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 31 0.55
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 30 0.96
01_05_0474 - 22552599-22552687,22553494-22553631,22553766-225544... 30 0.96
02_01_0475 + 3422629-3422695,3422960-3423216 28 2.9
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 28 3.9
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 27 5.1
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512... 27 5.1
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 27 5.1
03_02_1022 + 13260647-13260834,13260965-13261070,13262052-132621... 27 5.1
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 27 5.1
01_06_1261 - 35826513-35828941,35829201-35829294 27 6.8
06_01_0397 + 2855273-2855347,2855515-2855606,2856317-2856347,285... 27 9.0
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 107 bits (256), Expect = 5e-24
Identities = 42/84 (50%), Positives = 66/84 (78%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y
Sbjct: 164 LDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEY 223
Query: 181 IKLGVTADAIEAIYKKAHEAIRAD 252
+K G+ AD +EA+YKK H AIRAD
Sbjct: 224 LKKGIDADGMEALYKKVHAAIRAD 247
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 267 KELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 386
K KK+ KR+N +KLT +Q+KAS ++RL A
Sbjct: 252 KSTKKEPATHKRYNLKKLT-------YEQRKASLVERLNA 284
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 105 bits (253), Expect = 1e-23
Identities = 41/84 (48%), Positives = 66/84 (78%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y
Sbjct: 164 LDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEY 223
Query: 181 IKLGVTADAIEAIYKKAHEAIRAD 252
+K G+ AD +E++YKK H AIRAD
Sbjct: 224 LKKGIDADGMESLYKKVHAAIRAD 247
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 267 KELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 386
K KK+ KR+N +KLT +Q+KAS ++RL A
Sbjct: 252 KSTKKEPATHKRYNLKKLT-------YEQRKASLVERLNA 284
>12_02_0442 - 19118536-19119222
Length = 228
Score = 31.5 bits (68), Expect = 0.31
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 243 PCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 356
P G S ++ ++ S +Q+RW R+ T ER+ R+K+K
Sbjct: 192 PAGWSRRQWRWRRGSEEQRRWRMRRGT-GERRGRVKKK 228
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 30.7 bits (66), Expect = 0.55
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
KKK+ KK K+K+ NK+K ++K + K+KK
Sbjct: 74 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 29.9 bits (64), Expect = 0.96
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 240 HPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 377
+P KKK+ KK K+K+ K+K ++K + K+KK KR
Sbjct: 63 NPVVMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 371
KKK+ KK + K+K+ K+K ++K R KA I
Sbjct: 81 KKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKAQHI 117
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 29.9 bits (64), Expect = 0.96
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 251 ILPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 358
+LP E+ V ER + E LE + I EEK+ + +E
Sbjct: 517 VLPSEDSVSERRRKLEFLEMQEELIKEEEKKKEKEE 552
>01_05_0474 -
22552599-22552687,22553494-22553631,22553766-22554447,
22555120-22555167,22555395-22556042,22556960-22557310,
22558622-22558690
Length = 674
Score = 29.9 bits (64), Expect = 0.96
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +3
Query: 57 RIQKVQC*STQGSHLWFACC*-IHEKS*TG**GFFQETIQQVHKTRSHCRCY*SHLQES- 230
R+ + C TQ L CC + K G + +Q HK QES
Sbjct: 217 RVPDLSCKKTQKEELNSNCCEKLARKRKRGTEERMSSSKRQSHKDPKSLSL---KCQEST 273
Query: 231 P*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNR 344
P + P +SHKK E S+ Q ++ +L AER N+
Sbjct: 274 PTNKPRNTSHKKGENNSSSMPQPKFCDGRLMNAERNNK 311
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNKRKLTLAERKNRI 347
G KKK+ KK K+K+ K+K ++KN++
Sbjct: 42 GKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKL 74
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 243 PCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQ 383
P G + +K++LK K N + ++N++ Q KAS ++L+
Sbjct: 454 PMGEAARKRDLKPRETKSPASNDSLRPESRKQNKVAQNKASTEEKLK 500
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 297 KRWNKRKLTLAERKNRIKQKK 359
+RW K KL+ +ERK R ++ K
Sbjct: 229 ERWKKEKLSKSERKRRAREAK 249
>04_04_1146 +
31249488-31249722,31250145-31250236,31251158-31251209,
31251377-31251477,31251587-31252020,31252453-31252507,
31252614-31252667,31252774-31253190
Length = 479
Score = 27.5 bits (58), Expect = 5.1
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS-LEQDDEDSFKRQFSK 177
VDG +VP + G DA ++ A HR + HV ++ L + D F +
Sbjct: 329 VDGDGSVPVESAKADGLDAVARVGVAADHRGIVCDRHVFRIIQHWLHAGEPDPFYDPLND 388
Query: 178 YIKLGVTADAIEAIYKK 228
Y+ L TA IE ++K
Sbjct: 389 YVIL-PTAFEIEKYHEK 404
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 251 ILPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 358
+LP E+ V +R + E LE Q + +EE++ Q KE
Sbjct: 502 VLPSEDSVSDRKRKLEFLEM-QEELIKEEEKRQEKE 536
>03_02_1022 +
13260647-13260834,13260965-13261070,13262052-13262169,
13262271-13262539
Length = 226
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
G +KK+ +K++ K + +RK + ERK R ++K+ + R+ + A
Sbjct: 68 GFHKRKKKRRKEAQKILQEKERKKRIEERKRRKQEKEIALYGRVLSSDNA 117
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 279 KDSVKQKRWNKRKLTLAERKNRIKQKKASFI 371
KD KQK + K +L L ERK + K+ F+
Sbjct: 142 KDERKQKVFYKNQLELEERKKKALDKQLDFL 172
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 251 ILPQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSGGSLN 403
++ ++ ERL Q E + QT IG K ++ G +HQ+ SLN
Sbjct: 376 LIEDSSKLSERLKQVEEVLQTIQRIG---KSVHSENGNIHQQLTEVDDSLN 423
>06_01_0397 +
2855273-2855347,2855515-2855606,2856317-2856347,
2856687-2856830,2856935-2857162,2857374-2857487,
2857749-2858249
Length = 394
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
K E K ++ Q WN T+ E RI+Q++ + +KR +A A A
Sbjct: 181 KLEAKLQNL-QVEWNGGSDTMEEILGRIQQREEAAVKRERAMAYA 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,399,499
Number of Sequences: 37544
Number of extensions: 176750
Number of successful extensions: 674
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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