Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10971
(445 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 128 9e-30
U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein prot... 128 1e-29
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 128 1e-29
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 128 1e-29
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 128 1e-29
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 128 1e-29
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 128 1e-29
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 124 2e-28
AB061848-1|BAB79486.1| 62|Homo sapiens ribosomal protein L5 pr... 50 3e-06
BC048271-1|AAH48271.1| 611|Homo sapiens ZC3H11A protein protein. 32 0.78
U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator... 32 1.0
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator... 32 1.0
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix... 32 1.0
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein. 32 1.0
AC006127-2|AAC97987.1| 661|Homo sapiens SN24_HUMAN protein. 32 1.0
AC006127-1|AAC97986.1| 628|Homo sapiens BRG-1-HUMAN [AA 812-14... 32 1.0
BC028004-1|AAH28004.1| 621|Homo sapiens DMXL1 protein protein. 31 1.8
BC110828-1|AAI10829.1| 390|Homo sapiens RUNX1 protein protein. 31 2.4
BC031825-1|AAH31825.1| 560|Homo sapiens TAOK2 protein protein. 31 2.4
AK127997-1|BAC87222.1| 148|Homo sapiens protein ( Homo sapiens ... 31 2.4
U07806-1|AAB60380.1| 761|Homo sapiens DNA topoisomerase I protein. 29 5.5
U07804-1|AAB60379.1| 761|Homo sapiens DNA topoisomerase I protein. 29 5.5
M60706-1|AAA61206.1| 765|Homo sapiens topoisomerase I protein. 29 5.5
J03250-1|AAA61207.1| 765|Homo sapiens TOP1 protein. 29 5.5
BC067349-1|AAH67349.1| 165|Homo sapiens TOP1 protein protein. 29 5.5
BC004475-1|AAH04475.1| 164|Homo sapiens TOP1 protein protein. 29 5.5
AL035652-1|CAI19767.1| 765|Homo sapiens topoisomerase (DNA) I p... 29 5.5
AL022394-1|CAI42886.1| 765|Homo sapiens topoisomerase (DNA) I p... 29 5.5
BX537702-1|CAD97815.1| 479|Homo sapiens hypothetical protein pr... 29 7.2
BC030973-1|AAH30973.1| 392|Homo sapiens UBE4A protein protein. 29 7.2
BC026291-1|AAH26291.1| 440|Homo sapiens SLC22A12 protein protein. 29 7.2
M91585-1|AAB02119.1| 1214|Homo sapiens Br140 protein. 29 9.6
BC053851-1|AAH53851.1| 1220|Homo sapiens bromodomain and PHD fin... 29 9.6
BC029855-1|AAH29855.1| 179|Homo sapiens ZNF677 protein protein. 29 9.6
AF176815-1|AAF19605.1| 1214|Homo sapiens putative 8-hydroxyguani... 29 9.6
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 128 bits (309), Expect = 9e-30
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
VDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L ++DED++K+QFS+Y
Sbjct: 167 VDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRCLMEEDEDAYKKQFSQY 226
Query: 181 IKLGVTADAIEAIYKKAHEAIR 246
IK VT D +E +YKKAH AIR
Sbjct: 227 IKNSVTPDMMEEMYKKAHAAIR 248
Score = 50.4 bits (115), Expect = 3e-06
Identities = 22/45 (48%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK+KRWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 254 EKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
>U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein
protein.
Length = 145
Score = 128 bits (308), Expect = 1e-29
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
VDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L ++DED++K+QFS+Y
Sbjct: 15 VDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQY 74
Query: 181 IKLGVTADAIEAIYKKAHEAIR 246
IK VT D +E +YKKAH AIR
Sbjct: 75 IKNSVTPDMMEEMYKKAHAAIR 96
Score = 50.4 bits (115), Expect = 3e-06
Identities = 22/45 (48%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK+KRWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 102 EKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 145
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 128 bits (308), Expect = 1e-29
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
VDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L ++DED++K+QFS+Y
Sbjct: 167 VDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQY 226
Query: 181 IKLGVTADAIEAIYKKAHEAIR 246
IK VT D +E +YKKAH AIR
Sbjct: 227 IKNSVTPDMMEEMYKKAHAAIR 248
Score = 50.4 bits (115), Expect = 3e-06
Identities = 22/45 (48%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK+KRWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 254 EKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 128 bits (308), Expect = 1e-29
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
VDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L ++DED++K+QFS+Y
Sbjct: 167 VDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQY 226
Query: 181 IKLGVTADAIEAIYKKAHEAIR 246
IK VT D +E +YKKAH AIR
Sbjct: 227 IKNSVTPDMMEEMYKKAHAAIR 248
Score = 50.4 bits (115), Expect = 3e-06
Identities = 22/45 (48%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK+KRWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 254 EKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 128 bits (308), Expect = 1e-29
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
VDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L ++DED++K+QFS+Y
Sbjct: 167 VDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQY 226
Query: 181 IKLGVTADAIEAIYKKAHEAIR 246
IK VT D +E +YKKAH AIR
Sbjct: 227 IKNSVTPDMMEEMYKKAHAAIR 248
Score = 50.4 bits (115), Expect = 3e-06
Identities = 22/45 (48%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK+KRWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 254 EKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 128 bits (308), Expect = 1e-29
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
VDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L ++DED++K+QFS+Y
Sbjct: 167 VDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQY 226
Query: 181 IKLGVTADAIEAIYKKAHEAIR 246
IK VT D +E +YKKAH AIR
Sbjct: 227 IKNSVTPDMMEEMYKKAHAAIR 248
Score = 50.4 bits (115), Expect = 3e-06
Identities = 22/45 (48%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK+KRWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 254 EKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 128 bits (308), Expect = 1e-29
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
VDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L ++DED++K+QFS+Y
Sbjct: 167 VDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQY 226
Query: 181 IKLGVTADAIEAIYKKAHEAIR 246
IK VT D +E +YKKAH AIR
Sbjct: 227 IKNSVTPDMMEEMYKKAHAAIR 248
Score = 48.8 bits (111), Expect = 8e-06
Identities = 21/45 (46%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK++RWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 254 EKKPKKE-VKKERWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 124 bits (298), Expect = 2e-28
Identities = 56/82 (68%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
VDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L ++DED++K+QFS+Y
Sbjct: 174 VDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQY 233
Query: 181 IKLGVTADAIEAIYKKAHEAIR 246
IK VT D +E +YKKAH AIR
Sbjct: 234 IKNSVTPD-MEEMYKKAHAAIR 254
Score = 50.4 bits (115), Expect = 3e-06
Identities = 22/45 (48%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK+KRWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 260 EKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 303
>AB061848-1|BAB79486.1| 62|Homo sapiens ribosomal protein L5
protein.
Length = 62
Score = 50.4 bits (115), Expect = 3e-06
Identities = 22/45 (48%), Positives = 37/45 (82%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 398
+K+ KK+ VK+KRWN+ K++LA++K+R+ QKKASF++ + AE+
Sbjct: 19 EKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 62
>BC048271-1|AAH48271.1| 611|Homo sapiens ZC3H11A protein protein.
Length = 611
Score = 32.3 bits (70), Expect = 0.78
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 216 HLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H+Q+ P G+ KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 566 HMQKQP-----GNGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 608
>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
protein.
Length = 1647
Score = 31.9 bits (69), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNK--RKLTLAERKNRIKQKKASFIKRLQAQA 392
GS H+K+ DS+ +K+W K + TL E + ++QKK+S ++ + A
Sbjct: 1370 GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDA 1419
>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
hSNF2b protein.
Length = 1647
Score = 31.9 bits (69), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNK--RKLTLAERKNRIKQKKASFIKRLQAQA 392
GS H+K+ DS+ +K+W K + TL E + ++QKK+S ++ + A
Sbjct: 1370 GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDA 1419
>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1647
Score = 31.9 bits (69), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNK--RKLTLAERKNRIKQKKASFIKRLQAQA 392
GS H+K+ DS+ +K+W K + TL E + ++QKK+S ++ + A
Sbjct: 1370 GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDA 1419
>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
Length = 1647
Score = 31.9 bits (69), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNK--RKLTLAERKNRIKQKKASFIKRLQAQA 392
GS H+K+ DS+ +K+W K + TL E + ++QKK+S ++ + A
Sbjct: 1370 GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDA 1419
>AC006127-2|AAC97987.1| 661|Homo sapiens SN24_HUMAN protein.
Length = 661
Score = 31.9 bits (69), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNK--RKLTLAERKNRIKQKKASFIKRLQAQA 392
GS H+K+ DS+ +K+W K + TL E + ++QKK+S ++ + A
Sbjct: 557 GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDA 606
>AC006127-1|AAC97986.1| 628|Homo sapiens BRG-1-HUMAN [AA 812-1440]
protein.
Length = 628
Score = 31.9 bits (69), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNK--RKLTLAERKNRIKQKKASFIKRLQAQA 392
GS H+K+ DS+ +K+W K + TL E + ++QKK+S ++ + A
Sbjct: 524 GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDA 573
>BC028004-1|AAH28004.1| 621|Homo sapiens DMXL1 protein protein.
Length = 621
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 240 HPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H S+ KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 581 HNKSSNSKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 620
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 252 SSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
+S KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 586 NSKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 621
>BC110828-1|AAI10829.1| 390|Homo sapiens RUNX1 protein protein.
Length = 390
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 246 CGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
C KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 337 CKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 374
>BC031825-1|AAH31825.1| 560|Homo sapiens TAOK2 protein protein.
Length = 560
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 246 CGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
C KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 521 CEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 558
>AK127997-1|BAC87222.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ46115 fis, clone TESTI2037085. ).
Length = 148
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
KKK+ KK K+K+ K+K ++KN+ K+KK
Sbjct: 40 KKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKK 72
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
KKK+ KK + K+K+ K+K +RK + K+KK
Sbjct: 58 KKKKKKKKNKKKKKKKKKKKKKKKRKKKKKKKK 90
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
KKK+ KK K+KR K+K ++K + K+KK
Sbjct: 3 KKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKK 35
Score = 29.5 bits (63), Expect = 5.5
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
KKK+ KK K+K+ NK+K ++K + K++K
Sbjct: 51 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKRK 83
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 377
KKK+ KK K+K+ K+K ++K + K+KK KR
Sbjct: 44 KKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKR 82
Score = 29.1 bits (62), Expect = 7.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
KKK+ KK K K+ K+K ++K R K+KK
Sbjct: 55 KKKKKKKKKKKNKKKKKKKKKKKKKKKRKKKKK 87
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 377
KKK+ KK K+K+ K+K ++K + K+KK + K+
Sbjct: 32 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKK 70
Score = 28.7 bits (61), Expect = 9.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
KKK+ KK+ K+K+ K+K +K + K+KK
Sbjct: 59 KKKKKKKNKKKKKKKKKKKKKKKRKKKKKKKKK 91
>U07806-1|AAB60380.1| 761|Homo sapiens DNA topoisomerase I protein.
Length = 761
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 180 HKTRSHCRCY*SHLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H H H ++ H GSS K K+ KD K+KR K + A +IK++K
Sbjct: 45 HSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKR--KEEKVRASGDAKIKKEK 102
>U07804-1|AAB60379.1| 761|Homo sapiens DNA topoisomerase I protein.
Length = 761
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 180 HKTRSHCRCY*SHLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H H H ++ H GSS K K+ KD K+KR K + A +IK++K
Sbjct: 45 HSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKR--KEEKVRASGDAKIKKEK 102
>M60706-1|AAA61206.1| 765|Homo sapiens topoisomerase I protein.
Length = 765
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 180 HKTRSHCRCY*SHLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H H H ++ H GSS K K+ KD K+KR K + A +IK++K
Sbjct: 49 HSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKR--KEEKVRASGDAKIKKEK 106
>J03250-1|AAA61207.1| 765|Homo sapiens TOP1 protein.
Length = 765
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 180 HKTRSHCRCY*SHLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H H H ++ H GSS K K+ KD K+KR K + A +IK++K
Sbjct: 49 HSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKR--KEEKVRASGDAKIKKEK 106
>BC067349-1|AAH67349.1| 165|Homo sapiens TOP1 protein protein.
Length = 165
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 180 HKTRSHCRCY*SHLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H H H ++ H GSS K K+ KD K+KR K + A +IK++K
Sbjct: 49 HSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKR--KEEKVRASGDAKIKKEK 106
>BC004475-1|AAH04475.1| 164|Homo sapiens TOP1 protein protein.
Length = 164
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 180 HKTRSHCRCY*SHLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H H H ++ H GSS K K+ KD K+KR K + A +IK++K
Sbjct: 49 HSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKR--KEEKVRASGDAKIKKEK 106
>AL035652-1|CAI19767.1| 765|Homo sapiens topoisomerase (DNA) I
protein.
Length = 765
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 180 HKTRSHCRCY*SHLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H H H ++ H GSS K K+ KD K+KR K + A +IK++K
Sbjct: 49 HSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKR--KEEKVRASGDAKIKKEK 106
>AL022394-1|CAI42886.1| 765|Homo sapiens topoisomerase (DNA) I
protein.
Length = 765
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 180 HKTRSHCRCY*SHLQESP*SHPCGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
H H H ++ H GSS K K+ KD K+KR K + A +IK++K
Sbjct: 49 HSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKR--KEEKVRASGDAKIKKEK 106
>BX537702-1|CAD97815.1| 479|Homo sapiens hypothetical protein
protein.
Length = 479
Score = 29.1 bits (62), Expect = 7.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 252 SSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
S KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 438 SFEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 473
>BC030973-1|AAH30973.1| 392|Homo sapiens UBE4A protein protein.
Length = 392
Score = 29.1 bits (62), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
G KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 344 GVVEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 380
>BC026291-1|AAH26291.1| 440|Homo sapiens SLC22A12 protein protein.
Length = 440
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 252 SSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
++ KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 387 TNEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 422
>M91585-1|AAB02119.1| 1214|Homo sapiens Br140 protein.
Length = 1214
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 255 SHKKKELKKDSVKQ--KRWNKRKLTLAERKNRIKQKKA 362
SH + E +D + K W+ K+ A+ K+RIK KKA
Sbjct: 460 SHSEGEEDEDEEEDEGKGWSSEKVKKAKAKSRIKMKKA 497
>BC053851-1|AAH53851.1| 1220|Homo sapiens bromodomain and PHD finger
containing, 1 protein.
Length = 1220
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 255 SHKKKELKKDSVKQ--KRWNKRKLTLAERKNRIKQKKA 362
SH + E +D + K W+ K+ A+ K+RIK KKA
Sbjct: 460 SHSEGEEDEDEEEDEGKGWSSEKVKKAKAKSRIKMKKA 497
>BC029855-1|AAH29855.1| 179|Homo sapiens ZNF677 protein protein.
Length = 179
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 252 SSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
S KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 144 SLKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 179
>AF176815-1|AAF19605.1| 1214|Homo sapiens putative 8-hydroxyguanine
DNA glycosylase protein.
Length = 1214
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 255 SHKKKELKKDSVKQ--KRWNKRKLTLAERKNRIKQKKA 362
SH + E +D + K W+ K+ A+ K+RIK KKA
Sbjct: 460 SHSEGEEDEDEEEDEGKGWSSEKVKKAKAKSRIKMKKA 497
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,597,274
Number of Sequences: 237096
Number of extensions: 956847
Number of successful extensions: 4016
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 3327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3762
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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