Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10971
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.86 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 329 REEKQNQAKEGFLHQETAGS 388
           RE+ ++  KEG+LH   +G+
Sbjct: 690 REQTESDDKEGYLHSVVSGA 709



 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 239 PSVRILPQEERVK 277
           PS+RI P ++R+K
Sbjct: 193 PSIRITPAKKRIK 205


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 VKQKRWNKRKLTLAERKNRIKQKK 359
           + +  W+KR+ T  +RK   K++K
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRK 26


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 222 VDGFNSICSDS*FYVLAELSLERILI 145
           VD F S+C+   F  L E  L  I++
Sbjct: 307 VDAFMSVCTVFVFMALMEYCLVNIVL 332


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 260 QEERVKERLGQTEALEQTQANIGR 331
           Q++ V + L Q    +  QANIGR
Sbjct: 249 QQQIVGKYLQQQAGQQDQQANIGR 272


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 159 QETI-QQVHKTRSHCRCY*SHL 221
           +ETI   V  TR +  CY SH+
Sbjct: 302 EETIISSVFTTRHNATCYLSHV 323


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 159 QETI-QQVHKTRSHCRCY*SHL 221
           +ETI   V  TR +  CY SH+
Sbjct: 8   EETIISSVFTTRHNATCYLSHV 29


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 307 TNAS*HWPRGK 339
           T  S +WPRGK
Sbjct: 138 TGGSCYWPRGK 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,218
Number of Sequences: 438
Number of extensions: 1594
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)