Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10971
(445 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 103 7e-23
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 101 3e-22
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ... 30 0.81
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 29 1.4
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 29 1.4
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t... 29 1.4
At2g44670.1 68415.m05559 senescence-associated protein-related s... 29 1.9
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 2.5
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 3.3
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 27 4.3
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi... 27 5.7
At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX) ident... 27 5.7
At3g58330.1 68416.m06502 hypothetical protein 27 5.7
At1g71360.1 68414.m08237 expressed protein low similarity to PIR... 27 5.7
At3g23310.1 68416.m02940 protein kinase, putative contains prote... 27 7.5
At5g06970.1 68418.m00789 expressed protein 26 10.0
At4g40020.1 68417.m05666 hypothetical protein 26 10.0
At4g37860.1 68417.m05355 hypothetical protein 26 10.0
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05... 26 10.0
At3g10200.1 68416.m01221 dehydration-responsive protein-related ... 26 10.0
At1g77080.2 68414.m08975 MADS-box protein AGL27-II (AGL27) / MAD... 26 10.0
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 103 bits (246), Expect = 7e-23
Identities = 44/84 (52%), Positives = 63/84 (75%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+ + + FS Y
Sbjct: 166 LDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAY 225
Query: 181 IKLGVTADAIEAIYKKAHEAIRAD 252
IK GV A++IE +YKK H AIRAD
Sbjct: 226 IKKGVEAESIEELYKKVHAAIRAD 249
Score = 30.7 bits (66), Expect = 0.46
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 264 KKELKKDSVKQKRWNKRKLTLAERKNRIKQK 356
KK +K + KR+N +KLT ERKN++ ++
Sbjct: 253 KKTVKPAPKQHKRYNLKKLTYEERKNKLIER 283
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 101 bits (241), Expect = 3e-22
Identities = 43/84 (51%), Positives = 63/84 (75%)
Frame = +1
Query: 1 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKY 180
+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+ + + FS Y
Sbjct: 166 LDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAY 225
Query: 181 IKLGVTADAIEAIYKKAHEAIRAD 252
IK GV A++IE +YKK H AIRA+
Sbjct: 226 IKKGVEAESIEEMYKKVHAAIRAE 249
Score = 31.9 bits (69), Expect = 0.20
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 255 SHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 356
+HKK E K + KR+N +KLT ERKN++ ++
Sbjct: 251 NHKKTE-KSAPKEHKRYNLKKLTYEERKNKLIER 283
>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 816
Score = 29.9 bits (64), Expect = 0.81
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNK-RKLTLAERKNRIKQKKASFIK 374
K K+L + KRWN R+LTLA + ++++ ++F+K
Sbjct: 74 KGKKLTDKVLSSKRWNLYRQLTLARKMEKLEKTISNFLK 112
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQA 392
G S ++ K++ ++RW++ + A K R+K+K F K+++ Q+
Sbjct: 277 GQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQS 324
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQA 392
G S ++ K++ ++RW++ + A K R+K+K F K+++ Q+
Sbjct: 394 GQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQS 441
>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative
similar to pseudo-response regulator 9 [Arabidopsis
thaliana] GI:10281000, timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022
Length = 183
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQA 392
G S ++ K++ ++RW++ + A K R+K+K F K+++ Q+
Sbjct: 109 GQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQS 156
>At2g44670.1 68415.m05559 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana];
Length = 93
Score = 28.7 bits (61), Expect = 1.9
Identities = 8/39 (20%), Positives = 22/39 (56%)
Frame = +3
Query: 246 CGSSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKA 362
C + ++++++ D K+++W K +L + + K+ A
Sbjct: 43 CSNECREEQIESDEAKERKWKKSSRSLRKNSSETKESAA 81
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
K+KE KKD K+++ KR+ + K R+K++K
Sbjct: 1287 KEKEKKKDKEKKEKKRKREDPVYLEKKRLKKEK 1319
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 263 EERVKERLGQTEALEQTQANIGREEKQNQAKE 358
E R+KE + E ++ +A + +EEK+ Q KE
Sbjct: 750 ERRIKEAREKAELEQRLKATLEQEEKERQIKE 781
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 79 EVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 198
E HR H G V L+ DD +S++ + +K+ +T
Sbjct: 502 EFHRPHSVGTSVENQPTQLDWDDLESYRCIIQELVKINLT 541
>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 377
KKK + DS +KR + T A +K R+KQ SF+K+
Sbjct: 475 KKKTKEVDSNVKKRETLPEKT-ARKKKRLKQINMSFVKK 512
>At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX)
identical to SP|P55826
Length = 537
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 200 QMLLKPSTRKPMKPSVRILPQ 262
+ML+KP++ P+K VR+ PQ
Sbjct: 453 KMLIKPNSTDPLKLGVRVWPQ 473
>At3g58330.1 68416.m06502 hypothetical protein
Length = 173
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = +3
Query: 294 QKRWNKRKLTLAERKNRIKQKKASFIKRLQ 383
+++ NKRKLTL++ ++ +K++KA+ + Q
Sbjct: 138 EEQVNKRKLTLSDLESDLKKEKANQLSMAQ 167
>At1g71360.1 68414.m08237 expressed protein low similarity to
PIR|JC7185 chromosome 1 C1orf9 protein [Homo sapiens]
Length = 459
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 249 GSSHKKKELKKDSVKQKRWNKRKLTLAER----KNRIKQKKASFIKRLQ 383
G +++ KK++++ ++W R T E+ K ++K++ ++RL+
Sbjct: 354 GMKEREENTKKEAMEMRKWRMRVETELEKAENEKEKVKERLEQVLERLE 402
>At3g23310.1 68416.m02940 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 568
Score = 26.6 bits (56), Expect = 7.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 270 ELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAE 395
ELKK S K KR + + L E + + SF+K L Q E
Sbjct: 500 ELKKKSTKPKRPSIKSLFEDESASSTTSHQGSFMKLLPTQIE 541
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 258 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 374
H ++LKK +K++R + +L L K R+ ++ SF++
Sbjct: 475 HAIQQLKKIPLKEQRGPQERLHLKTLKCRVDNEEISFLE 513
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 261 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 359
+KKE KK++ K+K+ +K++ K K+KK
Sbjct: 402 EKKEEKKENKKEKKESKKEKKEHSEKKEDKEKK 434
>At4g37860.1 68417.m05355 hypothetical protein
Length = 354
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 260 QEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSG 391
+EE+ ERL + E EQ + E + Q K+ H + G G
Sbjct: 296 REEKRSERLAKKEDAEQLRLVEEEERVRRQKKQKLSHLKNCGLG 339
>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1097
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 191 ESLQMLLKPSTRKPMKPSVRILPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 358
ESL +P R P S+ L Q K + + L + + R K ++A++
Sbjct: 66 ESLSSKARPKMRSPRSGSIEELSQRLESKLNAAEQKRLSILEKELARLAKMDEARQ 121
>At3g10200.1 68416.m01221 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 591
Score = 26.2 bits (55), Expect = 10.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 206 LLKPSTRKPMKPSVRILPQ-EERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQE 376
+LKPS + P+K V+I Q EER + A T IG E + + F ++
Sbjct: 368 VLKPSWKVPLKDCVQISGQTEERPSSLAERLSAYPATLRKIGISEDEYTSDTVFWREQ 425
>At1g77080.2 68414.m08975 MADS-box protein AGL27-II (AGL27) / MADS
affecting flowering 1 (MAF1) contains similarity to MADS
box transcription factor GI:3688591 from [Triticum
aestivum]; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 192
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 227 KPMKPSVRILPQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQE 376
KP KP L EE+++ L E LE Q+ + N + + + E
Sbjct: 68 KPEKPQCFELDLEEKIQNYLPHKELLETVQSKLEEPNVDNVSVDSLISLE 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,357,730
Number of Sequences: 28952
Number of extensions: 146760
Number of successful extensions: 726
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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