Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10968X
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    27   2.5  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   4.4  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.9  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   5.9  

>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 232 CRGSRPWLSIKSD--KDKFQVNLDVQHFAPEEISVK 333
           CRGS PW  +++D  + K+Q   D +   P E+  K
Sbjct: 208 CRGSLPWQGLQADTKEQKYQRIRDTKIGTPLEVLCK 243


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 232 CRGSRPWLSIK--SDKDKFQVNLDVQHFAPEEI 324
           CRGS PW  +K  + K K++  ++ +   P E+
Sbjct: 209 CRGSLPWQGLKATTKKQKYEKIMEKKISTPTEV 241


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 329 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 433
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 563 GSRFWAIGNLAFTLHCW 513
           GSRF+  G+L  T+HCW
Sbjct: 101 GSRFYT-GSLDNTIHCW 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,902
Number of Sequences: 5004
Number of extensions: 47509
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)