Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10968X
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 40 0.002
03_02_0485 - 8808139-8808618 39 0.002
03_02_0484 + 8805053-8805538 39 0.003
03_02_0483 - 8804021-8804485 39 0.003
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 38 0.006
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 38 0.007
01_01_0229 - 1943473-1943922 37 0.010
01_01_0231 + 1951047-1951499 37 0.013
01_01_0227 + 1933247-1933699 36 0.030
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.48
02_05_0494 + 29486960-29487454 30 1.1
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 30 1.5
07_01_1127 + 10456895-10457388,10457488-10458112 29 2.6
04_03_0868 - 20420298-20420915 29 2.6
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 3.4
09_03_0036 + 11772940-11773171,11774995-11775104 29 3.4
04_01_0252 - 3329712-3331061 29 3.4
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940... 28 4.5
03_01_0491 + 3720842-3720958,3721904-3723109 28 4.5
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 6.0
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 27 7.9
08_01_0175 - 1497700-1498459,1498546-1499939 27 7.9
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +1
Query: 295 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 450
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ E
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 451 SVESRLSSDGVLSVIAPRK 507
+++ + +GVL+V P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>03_02_0485 - 8808139-8808618
Length = 159
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +1
Query: 295 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 450
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 451 SVESRLSSDGVLSVIAPRK 507
+++ + +GVL+V P++
Sbjct: 128 QIKASM-ENGVLTVTVPKE 145
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +1
Query: 295 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 450
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 451 SVESRLSSDGVLSVIAPRK 507
+++ + +GVL+V P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>03_02_0483 - 8804021-8804485
Length = 154
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +1
Query: 295 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 450
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 451 SVESRLSSDGVLSVIAPRK 507
+++ + +GVL+V P++
Sbjct: 123 QIKASM-ENGVLTVTVPKE 140
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Frame = +1
Query: 247 PWLSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ 408
PW ++ DK+ ++ D+ + EE+ V D +V+ G+H++++ + G+ +
Sbjct: 134 PWDVMEDDKE-VRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKER 192
Query: 409 ----FTRRYALPEGCTAESVESRLSSDGVLSVIAPR 504
+ R ALP+ C V + L +GVL V P+
Sbjct: 193 SVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPK 227
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 37.5 bits (83), Expect = 0.007
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 295 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 450
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 451 SVESRLSSDGVLSVIAPR 504
V++ L +GVL+V P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 295 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 450
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 451 SVESRLSSDGVLSVIAPR 504
V++ + +GVL+V P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 295 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 450
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 451 SVESRLSSDGVLSVIAPR 504
V++ + +GVL+V P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>01_01_0227 + 1933247-1933699
Length = 150
Score = 35.5 bits (78), Expect = 0.030
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = +1
Query: 355 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKGRQQWRVNA 534
V+GK++E+ S +F RR+ LP G + V + + +GVL+V P++ ++ ++ A
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKEETKKPQLKA 145
Query: 535 RFPIA 549
PI+
Sbjct: 146 -IPIS 149
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 370 RVCLQPRCSRPPF*QRFLPGRNAGR 296
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>02_05_0494 + 29486960-29487454
Length = 164
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 403 RQFTRRYALPEGCTAESVESRLSSDGVLSVIAP-RKGRQQWRVNAR 537
R ++ LPE A+ +R+ +DGVL+V P RKG+++ N +
Sbjct: 106 RAAVTQFRLPEDAAADEASARM-ADGVLTVTVPKRKGKKRHAGNGK 150
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 415 RRYALPEGCTAESVESRLSSDGVLSV-IAPR-KGRQQWRVNARFP 543
RR ALP G E+ ESR S V S I+PR +GR + R R P
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPP 149
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 370 RVCLQPRCSRPPF*QRFLPGRNAGR 296
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>04_03_0868 - 20420298-20420915
Length = 205
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 202 RILPPVASPCCRGSRPWLSIKSDKDKFQVNLDVQHFAPEEI 324
R PP S +G RPWLS+++ ++ ++ L +E+
Sbjct: 122 RAFPPPISVIGKGGRPWLSLRAHREAGRLVLREMRLPSQEL 162
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 317 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 412
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 315 GRNLC*NGGRLHRG*RQTRGEERSAWLH 398
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 370 RVCLQPRCSRPPF*QRFLPGRNAGR 296
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>04_04_1570 -
34492944-34493159,34493668-34493842,34493964-34494068,
34494454-34494623,34494760-34494830,34494950-34496799,
34497003-34497052,34497147-34497263
Length = 917
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 187 PPCEQRILPPVASPCCRGSRPWLSIKSDKDKF 282
PPC Q + + C GS WL+ K++ DKF
Sbjct: 329 PPCVQSKVTDLRGSKCGGSEGWLN-KANHDKF 359
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 199 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 101
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 262 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 435
+SDKDK N+D + A E + V+ E K +EK + H Y + R L E
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKE 558
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 262 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 435
+SDKDK N+D + A E + ++ E K +EK + H Y + R L E
Sbjct: 488 ESDKDKIMCNVDEKDIA-EHLRIRLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLKE 544
>08_01_0175 - 1497700-1498459,1498546-1499939
Length = 717
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 535 LRSPSTAGGPSWVRLQTTHHLKTAGTPQIQPYSPPAK 425
L+ + G W+ + T +L + GT YSPP +
Sbjct: 41 LQGSAAIAGDGWIEITTGSNLPSGGTMGRVAYSPPVQ 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,561
Number of Sequences: 37544
Number of extensions: 409488
Number of successful extensions: 1184
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -