Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10964X
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   141   6e-35
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   141   6e-35
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    31   0.089
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    27   1.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.5  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   3.4  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   5.9  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    25   7.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.7  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  141 bits (342), Expect = 6e-35
 Identities = 69/94 (73%), Positives = 81/94 (86%)
 Frame = +1

Query: 226 SLVNWRKPSAVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE 405
           +L+  + P  VLV A+   GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+  GARE
Sbjct: 100 ALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGARE 159

Query: 406 AAFRNIKTIAECVADELINAAKGSSNSYAIKKKD 507
           AAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKD
Sbjct: 160 AAFRNVKSISECLAEEIINAAKGSSNSYAIKKKD 193



 Score =  117 bits (282), Expect = 1e-27
 Identities = 58/83 (69%), Positives = 69/83 (83%)
 Frame = +2

Query: 8   VQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKL 187
           V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL
Sbjct: 29  VEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKL 86

Query: 188 MAVRIVKHAFEIIHLLTGENPLQ 256
           +A RIVKHAFEII LLT +NPLQ
Sbjct: 87  LATRIVKHAFEIIALLTDQNPLQ 109


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  141 bits (342), Expect = 6e-35
 Identities = 69/94 (73%), Positives = 81/94 (86%)
 Frame = +1

Query: 226 SLVNWRKPSAVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE 405
           +L+  + P  VLV A+   GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+  GARE
Sbjct: 100 ALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGARE 159

Query: 406 AAFRNIKTIAECVADELINAAKGSSNSYAIKKKD 507
           AAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKD
Sbjct: 160 AAFRNVKSISECLAEEIINAAKGSSNSYAIKKKD 193



 Score =  117 bits (282), Expect = 1e-27
 Identities = 58/83 (69%), Positives = 69/83 (83%)
 Frame = +2

Query: 8   VQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKL 187
           V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL
Sbjct: 29  VEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKL 86

Query: 188 MAVRIVKHAFEIIHLLTGENPLQ 256
           +A RIVKHAFEII LLT +NPLQ
Sbjct: 87  LATRIVKHAFEIIALLTDQNPLQ 109


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 31.5 bits (68), Expect = 0.089
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 131 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQYS*LPLSTLDPV 292
           V+ L N +M     +GKK  A +IV  A  II   TGENP+      ++ + P+
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPL 175


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 483 LLRHQKEGRLERVAKSN 533
           LL+HQKEGR+ ++  SN
Sbjct: 125 LLQHQKEGRINKIGVSN 141


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 281 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 397
           ++PV  R  SVV    V +P+ +H   +S  ++G   Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -1

Query: 413 NAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPELIMAVTSTAEGFLQ 237
           N  S A V    +  L R++G    +   +V + PI    +      +A++  +EGF+Q
Sbjct: 469 NMESNAEVSPDGMTLLPRKRGRPRKSANISVTSSPIRPSKNENNLPSLAISPVSEGFIQ 527


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 5   DVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 97
           ++++++  +   I+V+EKYAK  P    R A
Sbjct: 20  ELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +1

Query: 139 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSA 255
           PYK+   +  + W +  G+TY  + +  + L   R+ ++
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRETAS 176


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 89  RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 229
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,752
Number of Sequences: 5004
Number of extensions: 47056
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)