Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10964X
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               168   2e-42
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.6  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   4.6  
SB_21583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              27   8.1  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  168 bits (409), Expect = 2e-42
 Identities = 82/93 (88%), Positives = 86/93 (92%)
 Frame = +1

Query: 229 LVNWRKPSAVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREA 408
           L+    P  VLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE+
Sbjct: 170 LLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARES 229

Query: 409 AFRNIKTIAECVADELINAAKGSSNSYAIKKKD 507
           AFRNIK+IAEC+ADELINAAKGSSNSYAIKKKD
Sbjct: 230 AFRNIKSIAECLADELINAAKGSSNSYAIKKKD 262



 Score =  160 bits (389), Expect = 6e-40
 Identities = 72/84 (85%), Positives = 80/84 (95%)
 Frame = +2

Query: 5   DVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKK 184
           DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KRFRKAQCPIVER+TNS+MMHGRNNGKK
Sbjct: 95  DVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKK 154

Query: 185 LMAVRIVKHAFEIIHLLTGENPLQ 256
           LM VRI+KH+FEIIHLLTGENPLQ
Sbjct: 155 LMTVRIIKHSFEIIHLLTGENPLQ 178


>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -1

Query: 518 TLQPSFFLMA*ELDEPLAALINSSATHSAIVLIFLNAASRAPVHKSQIAWLTRRKGETST 339
           T+ P F +MA  LD  + A++N S+      +   N  S        + WL + K   +T
Sbjct: 17  TMAPQFRIMA-RLDGEMRAILNDSSLPLDAQIRLYNRVSN-----QYLKWLKQVKDGGNT 70

Query: 338 A*RRTVPARPIL 303
             R  +PA+P L
Sbjct: 71  NRRTRIPAKPTL 82


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 465  CIN*FICNTLCDCFNISECSLTCTC 391
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 447 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 358
           C   C C   + C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_21583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 327 NCTRTTDPSRIFTGSRVDNGSHEYCRG--FSPVNK*IISNACLTIRTAISFLPLFRPCI 157
           N    +DP  IF  S+ D+G     R     P N  I+S+ CL   +  + LP +  CI
Sbjct: 151 NINVESDPCNIFCASKADHGKVCQVRSPRLRPNNDVILSHTCLCSHS--NTLPKYHNCI 207


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 474 TLSCIN*FICNTLCDCFNISECSLTCTCAQKPDC 373
           T  C +   C +  +C + SEC  T  CA   +C
Sbjct: 94  TRECESTSECESTTECESTSECESTSECASTTEC 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,146,746
Number of Sequences: 59808
Number of extensions: 375529
Number of successful extensions: 980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)