Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10964X
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   169   1e-42
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    29   1.8  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    29   1.8  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12 transcrip...    27   7.1  
AL110501-6|CAH19094.1|  466|Caenorhabditis elegans Hypothetical ...    27   7.1  
AL110501-5|CAB54505.1|  552|Caenorhabditis elegans Hypothetical ...    27   7.1  
AC006620-3|AAF39779.2|  579|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    27   9.4  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  169 bits (411), Expect = 1e-42
 Identities = 81/93 (87%), Positives = 86/93 (92%)
 Frame = +1

Query: 229 LVNWRKPSAVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREA 408
           L+    P  VLV A+INSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAIWLLCTGAREA
Sbjct: 108 LLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREA 167

Query: 409 AFRNIKTIAECVADELINAAKGSSNSYAIKKKD 507
           AFRN+KTIAEC+ADELINAAKGSSNSYAIKKKD
Sbjct: 168 AFRNVKTIAECLADELINAAKGSSNSYAIKKKD 200



 Score =  146 bits (353), Expect = 1e-35
 Identities = 69/83 (83%), Positives = 74/83 (89%)
 Frame = +2

Query: 8   VQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKL 187
           V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVERL NSLMMHGRNNGKKL
Sbjct: 34  VNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKL 93

Query: 188 MAVRIVKHAFEIIHLLTGENPLQ 256
           M VRIVKHAFEII+LLTGENP+Q
Sbjct: 94  MTVRIVKHAFEIIYLLTGENPVQ 116


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 275 STLDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 448
           S  D + ++ G  V V  +  P   +    S  QSGF    HV++  EIL+Q+  V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTY-IRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205


>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 412 FRNIKTIAECVADELINAAKGSSNSYAIKKKDGW 513
           ++N++  AE   D  I+A KG++ S +I KK GW
Sbjct: 702 WKNVEEPAENGRDLFIHADKGATMSRSIAKKKGW 735


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 412 FRNIKTIAECVADELINAAKGSSNSYAIKKKDGW 513
           ++N++  AE   D  I+A KG++ S +I KK GW
Sbjct: 649 WKNVEEPAENGRDLFIHADKGATMSRSIAKKKGW 682


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 417 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 307
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 417 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 307
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 456 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 417 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 307
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 417 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 307
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 195 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -3

Query: 468 SCIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD----PS 301
           SC   F+ N    C N +EC  T +  + P  LVD   G   +  T   T   D    PS
Sbjct: 200 SCKKGFLRNRQGQCVNPTECPATGSTDENPCNLVDCRTGHQCSMSTGKPTCVPDYSDTPS 259

Query: 300 RIFTGSRVD 274
            +F G+  D
Sbjct: 260 PLFPGNGSD 268


>U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12
           transcriptional activator protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 395 VHVRLHSEILKQSQSVLQMN*LMQLRVHLTPTPSKRRTAG 514
           VH +++ E+ K+SQ++       Q+   +TPTP+    +G
Sbjct: 325 VHDKIYEELQKKSQNIPVNAPTRQIWTAITPTPAPEAASG 364


>AL110501-6|CAH19094.1|  466|Caenorhabditis elegans Hypothetical
           protein Y79H2A.1b protein.
          Length = 466

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 395 VHVRLHSEILKQSQSVLQMN*LMQLRVHLTPTPSKRRTAG 514
           VH +++ E+ K+SQ++       Q+   +TPTP+    +G
Sbjct: 276 VHDKIYEELQKKSQNIPVNAPTRQIWTAITPTPAPEAASG 315


>AL110501-5|CAB54505.1|  552|Caenorhabditis elegans Hypothetical
           protein Y79H2A.1a protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 395 VHVRLHSEILKQSQSVLQMN*LMQLRVHLTPTPSKRRTAG 514
           VH +++ E+ K+SQ++       Q+   +TPTP+    +G
Sbjct: 362 VHDKIYEELQKKSQNIPVNAPTRQIWTAITPTPAPEAASG 401


>AC006620-3|AAF39779.2|  579|Caenorhabditis elegans Hypothetical
           protein C51G7.4 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 395 VHVRLHSEILKQSQSVLQMN*LMQLRVHLTPTPSKRRTAG 514
           VH +++ E+ K+SQ++       Q+   +TPTP+    +G
Sbjct: 389 VHDKIYEELQKKSQNIPVNAPTRQIWTAITPTPAPEAASG 428


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -3

Query: 468 SCIN*FICNTLCDCFNI-SECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD 307
           SC    IC   C    I S+CS TC  A  P C   S    N    +T C  T D
Sbjct: 55  SCQQAPICQPQCPRAEINSDCSATCVRACIPSC---SKSTGNTFACSTTCESTCD 106


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 527 FSNTLQPSFFLMA*ELDEPLAALINSSATHSAIVLIFLNAASRAPVHKSQIAWLTRRK 354
           FS T  P F +M  E+    + ++ ++      + IF+++  RA + KS I W T+ K
Sbjct: 297 FSET--PGFTIMLHEISYIFSVILIANTISHFFICIFMSSQYRAELKKS-IYWRTKAK 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,192
Number of Sequences: 27780
Number of extensions: 278527
Number of successful extensions: 745
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)