Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10964X
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   154   4e-38
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   153   8e-38
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   153   8e-38
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ...    30   1.2  
At4g39450.1 68417.m05582 expressed protein                             29   2.9  
At4g36640.1 68417.m05200 SEC14 cytosolic factor family protein /...    27   6.6  
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    27   6.6  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    27   8.7  
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ...    27   8.7  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  154 bits (373), Expect = 4e-38
 Identities = 74/87 (85%), Positives = 81/87 (93%)
 Frame = +1

Query: 247 PSAVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIK 426
           P  V++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGAREAAFRNIK
Sbjct: 111 PIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIK 170

Query: 427 TIAECVADELINAAKGSSNSYAIKKKD 507
           TIAEC+ADELINAAKGSSNSYAIKKKD
Sbjct: 171 TIAECLADELINAAKGSSNSYAIKKKD 197



 Score =  137 bits (331), Expect = 6e-33
 Identities = 65/85 (76%), Positives = 75/85 (88%), Gaps = 1/85 (1%)
 Frame = +2

Query: 5   DVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGK 181
           DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGK
Sbjct: 29  DVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGK 88

Query: 182 KLMAVRIVKHAFEIIHLLTGENPLQ 256
           KLMAVRIVKHA EIIHLL+  NP+Q
Sbjct: 89  KLMAVRIVKHAMEIIHLLSDLNPIQ 113


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  153 bits (371), Expect = 8e-38
 Identities = 73/87 (83%), Positives = 81/87 (93%)
 Frame = +1

Query: 247 PSAVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIK 426
           P  V++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIK
Sbjct: 111 PIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIK 170

Query: 427 TIAECVADELINAAKGSSNSYAIKKKD 507
           TIAEC+ADELINAAKGSSNSYAIKKKD
Sbjct: 171 TIAECLADELINAAKGSSNSYAIKKKD 197



 Score =  136 bits (329), Expect = 1e-32
 Identities = 65/85 (76%), Positives = 75/85 (88%), Gaps = 1/85 (1%)
 Frame = +2

Query: 5   DVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGK 181
           DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGK
Sbjct: 29  DVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGK 88

Query: 182 KLMAVRIVKHAFEIIHLLTGENPLQ 256
           KLMAVRIVKHA EIIHLL+  NP+Q
Sbjct: 89  KLMAVRIVKHAMEIIHLLSDLNPIQ 113


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  153 bits (371), Expect = 8e-38
 Identities = 73/87 (83%), Positives = 81/87 (93%)
 Frame = +1

Query: 247 PSAVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIK 426
           P  V++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIK
Sbjct: 111 PIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIK 170

Query: 427 TIAECVADELINAAKGSSNSYAIKKKD 507
           TIAEC+ADELINAAKGSSNSYAIKKKD
Sbjct: 171 TIAECLADELINAAKGSSNSYAIKKKD 197



 Score =  136 bits (329), Expect = 1e-32
 Identities = 65/85 (76%), Positives = 75/85 (88%), Gaps = 1/85 (1%)
 Frame = +2

Query: 5   DVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGK 181
           DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGK
Sbjct: 29  DVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGK 88

Query: 182 KLMAVRIVKHAFEIIHLLTGENPLQ 256
           KLMAVRIVKHA EIIHLL+  NP+Q
Sbjct: 89  KLMAVRIVKHAMEIIHLLSDLNPIQ 113


>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 901

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +2

Query: 35  DYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI---V 205
           D  SVK +  K LP S G   H RF      +V  L +++      N K ++ + +   +
Sbjct: 574 DLSSVKFEGGK-LPSSIGGLIHLRFLSLHQAVVSHLPSTI-----RNLKLMLYLNLHVAI 627

Query: 206 KHAFEIIHLLTGENPLQYS*LPLSTLDPVKIRLGSVVRVQFV 331
                + ++L     L+Y  LPL   D  K+ LG +V ++++
Sbjct: 628 GVPVHVPNVLKEMLELRYLSLPLDMHDKTKLELGDLVNLEYL 669


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +1

Query: 343 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 486
           DVSPL  +   IWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At4g36640.1 68417.m05200 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           polyphosphoinositide binding protein Ssh1p (GI:2739044)
           {Glycine max, SEC14 cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
           and to SEC14 cytosolic factor (SP:P53989) [Candida
           glabrata]
          Length = 294

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 418 NIKTIAECVADELINAAKGSSNSYAIKKKDGWSVLLNPTVK 540
           NI+ +   + + +IN  KG      +    GWS+ +NP +K
Sbjct: 120 NIRHLVYLLENAIINLPKGQKQMSWLIDFTGWSMAVNPPMK 160


>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
           protein contains Pfam profile PF00383: Cytidine and
           deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 26/96 (27%), Positives = 38/96 (39%)
 Frame = +1

Query: 115 SPVPNRGAPYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAVLVTAIINSGPRE 294
           S +P R   YKLS    S +      R+ C  C    S  ++ KP  ++    +  G R+
Sbjct: 23  SLLPERSESYKLSKAYTSSRCYCVSSRSSCCCCCSTPSSSSFVKPKVLINPGFVLYGVRQ 82

Query: 295 DSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAR 402
            ST I      RR  V     R +   ++  C G R
Sbjct: 83  -STLIQWPSFQRRLLVGGG--RLMGCEVYSSCDGIR 115


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 323 QFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQMN 454
           +F ++P+ F    + TK    CA V +    +ILK S  +L  +
Sbjct: 733 KFSIQPVRFTALFKMTKVKDLCAVVELEKLIDILKHSHELLSQD 776


>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 749

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 77  HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNG 178
           HS+ + +     KA  P V   TNSL +  +NNG
Sbjct: 291 HSSAKSSRLPSLKAVSPAVTSATNSLFLDHKNNG 324


>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +2

Query: 71  LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF-EIIHLLTGEN 247
           LP S G   H RF       +  L +SL      N K L+ + +  +    + ++L    
Sbjct: 477 LPSSIGDLIHLRFLSLHRAWISHLPSSL-----RNLKLLLYLNLGFNGMVHVPNVLKEMQ 531

Query: 248 PLQYS*LPLSTLDPVKIRLGSVVRVQ 325
            L+Y  LP+S  D  K+ L  +V ++
Sbjct: 532 ELRYLQLPMSMHDKTKLELSDLVNLE 557


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,267,262
Number of Sequences: 28952
Number of extensions: 247927
Number of successful extensions: 636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)