Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10960
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 54 7e-08
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 47 1e-05
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 47 1e-05
01_01_1152 + 9170628-9171899 42 4e-04
11_02_0012 - 7346282-7347136,7347234-7347593 41 7e-04
11_01_0771 + 6453130-6454488 40 0.002
11_01_0767 + 6438648-6438809,6439146-6440000 39 0.004
11_02_0011 - 7337618-7338496,7338596-7338991 38 0.007
11_02_0014 - 7352619-7352918,7353173-7353418 37 0.011
04_04_0619 + 26652923-26653267,26653440-26654273 37 0.011
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 30 1.7
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.3
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 4.0
11_01_0750 - 6315126-6315896,6316371-6316784 29 4.0
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 5.3
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 28 7.0
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 28 7.0
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 7.0
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 27 9.3
10_02_0112 + 5385660-5385821,5386337-5386876 27 9.3
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
RIKD + D++ AT AVL NA+YFKG W SKFD R TSD
Sbjct: 156 RIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSD 195
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
IK++ P S++ T VL NA+YFKGAW+ KFD T D
Sbjct: 481 IKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTED 519
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
IK+++ P S+ T VL NA+YFKGAW+ KFD T D
Sbjct: 229 IKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKD 267
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
IK+++ P S+ T VL NA+YFKGAW+ KFD T D
Sbjct: 21 IKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKD 59
>01_01_1152 + 9170628-9171899
Length = 423
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
I+D++ P+S+ S+T VL NA++FKG WS F T
Sbjct: 175 IRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSAT 211
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTS 625
I++++ S+ TA VLVNAIYFKG WS+ F T+
Sbjct: 140 IREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTT 177
>11_01_0771 + 6453130-6454488
Length = 452
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDE 613
I D++ P S+ TA VL NAIYFKG W F+E
Sbjct: 189 ITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNE 222
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
I +++ P+S S T V+ NAIYFKG W + FD+ T++
Sbjct: 74 ITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAE 112
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTS 625
I +++ S+ TA VLVNAIYFKG WS+ F T+
Sbjct: 152 IPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTT 189
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTS 625
I +++ S+ T VLVNAIYFKG WS F T+
Sbjct: 102 IPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTT 139
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFD 610
R+ + ++P + S+T VL NA++FK W KF+
Sbjct: 134 RLNNTISPGTFGSSTKCVLANAMHFKATWGRKFE 167
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 175 VLSAFSVLPPLAQLALASDGETHEELLKLSASLTTMLYEQNSRVKAVIFDQLKALSL 345
+ + SV L +L+L S + + AS +LY+ N+R ++ +F LK S+
Sbjct: 1616 ITNKISVSINLVELSLHSGSTRDSPMASMQASGAWLLYKSNTREESFLFATLKGFSV 1672
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 273 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 398
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 291 TEFASKSRDLRSIKGVELKMANKVYVHDG 377
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
+ L+ ++ T VL +A+YF+G W + D R T++
Sbjct: 158 VTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTE 196
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 331 LIDRRSRLLLANSVRIASSSGK 266
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 138 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 34
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 138 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 34
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 292 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPGTSSIRTSKTLISRRI 459
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 291 TEFASKSRDLRSIKGVELKMANKVYVHDG 377
T+ S S+D++ ++ V+ + N VHDG
Sbjct: 139 TQIPSASKDIKEVRAVDEFLPNDFVVHDG 167
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 40 ICLFTIAIAAMAAVTNLSNVLKNGNDNF--TARMFTEVVKNNPGKSVVLSAFSVLPPLAQ 213
+CL T+ + + ++ +S++LK G +NF ++ + VV+ P K + +F L +
Sbjct: 43 MCLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVR 102
Query: 214 LALASDGETHEELLK 258
L +T + K
Sbjct: 103 LCFNRKNKTLGAIFK 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,376
Number of Sequences: 37544
Number of extensions: 305205
Number of successful extensions: 907
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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