Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10960
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 46 3e-05
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 42 4e-04
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 37 0.016
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 30 1.8
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41) 29 3.1
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 29 4.1
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 28 7.2
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38) 27 9.5
SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/89 (24%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 KAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDV 434
K FP D + ++ + + G ++ MAN+++ G ++ E F S++ F++++
Sbjct: 58 KTFHFPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEM 117
Query: 435 QNIDFSKNTVAAK-SINDWVEENTNNALR 518
+D+ KN+ A+ ++N WVE+ T + ++
Sbjct: 118 ALVDYVKNSNGARDTVNRWVEQKTKDKIK 146
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 494 RKYQ*RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
+K + +IK+L+ + T LVNA+YFKG+W F+ T
Sbjct: 139 QKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNAT 181
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 339 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNAL 515
E+++ NK++ HD ++ E F +R+ ++S++ +DF +K A K +N WV + T +
Sbjct: 54 EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113
Query: 516 R 518
+
Sbjct: 114 K 114
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK+L+ ++S T ++VNA+YFKG W +F E T
Sbjct: 113 IKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENT 149
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKF 607
+I DL+ P + T LVNAIYFKG W F
Sbjct: 107 KICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPF 139
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 339 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNAL 515
E+ +AN +++ + + F + + +++D+ +D+ + A K +N WVEE T +
Sbjct: 49 EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +3
Query: 249 AFKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 428
AF F DD + E S+++D +++ K + K +E+ + S +F+
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473
Query: 429 DVQNIDFSKNTVAAKSINDW---VEENTNNALR 518
+ +N+DFS + ++ DW VE N+LR
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLEVENTMRNSLR 506
>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
Length = 257
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 391 RILQSFPGTSSIRTSKTLISRRIQSQLS 474
R+ SFPG S TL++R QSQ+S
Sbjct: 65 RLYDSFPGASRSEAESTLLARMRQSQVS 92
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 67 AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 234
+MAAV + +L+ + + + ++KNN +S+ AF+ L L L L+S+G
Sbjct: 36 SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 75 CHCRDGDSKQTNDCL 31
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
HQ L + E + ++PK PR +F L
Sbjct: 56 HQNLSINEMDSSSPKRPRQHQFGL 79
>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
HQ L + E + ++PK PR +F L
Sbjct: 50 HQNLSINEMDSSSPKRPRQHQFGL 73
>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
HQ L + E + ++PK PR +F L
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQFGL 44
>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
HQ L + E + ++PK PR +F L
Sbjct: 7 HQNLSINEMDSSSPKCPRQHQFGL 30
>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
Length = 1541
Score = 27.5 bits (58), Expect = 9.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 374 WWKTRREFCSRFQGRLQFGRPK 439
W + RRE+C++ Q R ++ +P+
Sbjct: 1275 WLRWRREYCTQLQSRQKWNKPQ 1296
>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1138
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 193 VLPPLAQLALASDGETHEELLKLSASLTTMLYEQNSRV 306
+LPPLA L +++G T L++ + +++ +Y NS V
Sbjct: 993 ILPPLASLVSSTNGNTRMLCLRMFSDVSS-IYLDNSNV 1029
>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 232 HQKLKLTEREEAAPKMPRGQRF 167
H+ L + ER+ ++PK PR +F
Sbjct: 21 HENLSINERDSSSPKRPRQHQF 42
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,425
Number of Sequences: 59808
Number of extensions: 356418
Number of successful extensions: 1193
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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