Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10960
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein ... 50 1e-06
U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein ... 50 1e-06
U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein ... 50 1e-06
AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or cys... 50 1e-06
AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or cys... 50 1e-06
AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or cys... 50 1e-06
U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein... 46 2e-05
AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or cys... 46 2e-05
AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or cys... 46 3e-05
AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin prote... 46 3e-05
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 42 3e-04
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 42 3e-04
AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or cys... 41 6e-04
AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin prote... 41 6e-04
Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical pr... 31 0.90
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 31 0.90
U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z78542-6|CAB01749.2| 695|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z93383-11|CAI58635.1| 279|Caenorhabditis elegans Hypothetical p... 28 6.3
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr... 27 8.4
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 8.4
>U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform a protein.
Length = 366
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 452
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 453 KNTVAAKSINDWVEENTNNALR 518
A++IN++V ENT + ++
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK ++ DS++S AVL NA+YFK W +KF + T
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDST 177
>U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform b protein.
Length = 366
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 452
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 453 KNTVAAKSINDWVEENTNNALR 518
A++IN++V ENT + ++
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK ++ DS++S AVL NA+YFK W +KF + T
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDST 177
>U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein 7,
isoform c protein.
Length = 365
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 452
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 453 KNTVAAKSINDWVEENTNNALR 518
A++IN++V ENT + ++
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK ++ DS++S AVL NA+YFK W +KF + T
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDST 177
>AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 365
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 452
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 453 KNTVAAKSINDWVEENTNNALR 518
A++IN++V ENT + ++
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK ++ DS++S AVL NA+YFK W +KF + T
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDST 177
>AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 452
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 453 KNTVAAKSINDWVEENTNNALR 518
A++IN++V ENT + ++
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK ++ DS++S AVL NA+YFK W +KF + T
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDST 177
>AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 452
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 453 KNTVAAKSINDWVEENTNNALR 518
A++IN++V ENT + ++
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK ++ DS++S AVL NA+YFK W +KF + T
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDST 177
>U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein 6
protein.
Length = 375
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK ++NPDS+S AVL NA YFK W +KF + T
Sbjct: 150 IKKIINPDSISEELVAVLTNAFYFKANWQTKFKKEST 186
>AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 375
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLT 622
IK ++NPDS+S AVL NA YFK W +KF + T
Sbjct: 150 IKKIINPDSISEELVAVLTNAFYFKANWQTKFKKEST 186
>AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 359
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/62 (29%), Positives = 39/62 (62%)
Frame = +3
Query: 333 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNA 512
GVE K+ N+V+V+ + +++ ++ + +++DFS+ AAK++N +VE +TN
Sbjct: 77 GVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFVENHTNGK 136
Query: 513 LR 518
++
Sbjct: 137 IK 138
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTS 625
+IKDL+ DS ++A A LVNA+YFK W SKF + T+
Sbjct: 136 KIKDLIPADSANNAFA-FLVNAMYFKADWQSKFAKESTT 173
>AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin protein
2 protein.
Length = 359
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/62 (29%), Positives = 39/62 (62%)
Frame = +3
Query: 333 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNA 512
GVE K+ N+V+V+ + +++ ++ + +++DFS+ AAK++N +VE +TN
Sbjct: 77 GVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFVENHTNGK 136
Query: 513 LR 518
++
Sbjct: 137 IK 138
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTS 625
+IKDL+ DS ++A A LVNA+YFK W SKF + T+
Sbjct: 136 KIKDLIPADSANNAFA-FLVNAMYFKADWQSKFAKESTT 173
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 DDAIRTEFASKSRDLRS-IKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 452
D+ + F+ S+++++ KGVE+ +ANKVY+ G ++ F + + +D +++D +
Sbjct: 60 DEQLVEHFSFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLT 119
Query: 453 KNTVAAKSINDWVEENTNNALR 518
A + IN +V TN ++
Sbjct: 120 -TPAAVQEINSFVNTATNGKIK 140
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
+IK++ DS+ A A +L+N+IYFK W KFD S+
Sbjct: 138 KIKNIATQDSIKDAIA-LLINSIYFKADWDDKFDGMSVSE 176
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 DDAIRTEFASKSRDLRS-IKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 452
D+ + F+ S+++++ KGVE+ +ANKVY+ G ++ F + + +D +++D +
Sbjct: 60 DEQLVEHFSFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLT 119
Query: 453 KNTVAAKSINDWVEENTNNALR 518
A + IN +V TN ++
Sbjct: 120 -TPAAVQEINSFVNTATNGKIK 140
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
+IK++ DS+ A A +L+N+IYFK W KFD S+
Sbjct: 138 KIKNIATQDSIKDAIA-LLINSIYFKADWDDKFDGMSVSE 176
>AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +3
Query: 324 SIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENT 503
S+ VE +AN+++V + + F R+ +N++ IDF K+ AAK +N ++ E+T
Sbjct: 84 SVNDVETLIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAAKIMNQFISEST 143
Query: 504 NNAL 515
+
Sbjct: 144 KGKI 147
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
+I D++ PD+L A +L+NAI+F+G W KF E S+
Sbjct: 146 KIPDMIKPDNLKDVDA-ILINAIFFQGDWRRKFGEPAESN 184
>AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin protein
1 protein.
Length = 366
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +3
Query: 324 SIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENT 503
S+ VE +AN+++V + + F R+ +N++ IDF K+ AAK +N ++ E+T
Sbjct: 84 SVNDVETLIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAAKIMNQFISEST 143
Query: 504 NNAL 515
+
Sbjct: 144 KGKI 147
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 628
+I D++ PD+L A +L+NAI+F+G W KF E S+
Sbjct: 146 KIPDMIKPDNLKDVDA-ILINAIFFQGDWRRKFGEPAESN 184
>Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical
protein F36F2.2 protein.
Length = 290
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 256 LKALHGFHHQKLKLTEREEAAPKMPRGQRFSL 161
LK L H ++ T EE+ P P+GQRF L
Sbjct: 162 LKGLEEVHEIEVDKTVIEESIPNQPKGQRFDL 193
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 1, isoform a
protein.
Length = 1281
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 205 LAQLALASDGETHEELLKLSASLTTMLYEQNSRVKAVIFDQLKALSLK 348
+AQ+A+ + +ELL+L + LT YE++S + +V Q+ AL LK
Sbjct: 911 IAQVAMKDFTKAEKELLRLESLLTKKQYERHSLLHSVKLGQI-ALPLK 957
>U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical
protein C09B9.3 protein.
Length = 884
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = -2
Query: 497 FFYPIVNRLSCDCILREINVLDVRIEDVPGNDCKILV*FSTIMNVYFIRHFKLNA----- 333
+++PIV C++ + V + + + +D V F N+Y + +
Sbjct: 268 YYFPIVTVFQFICLMGWLKVAEALLNPLGEDDDDFEVNFLIDSNIYMTMSYNCDVATDSY 327
Query: 332 FN*SKITAFTREFCSYSIVVREADSFKSSSWVS 234
FN K+ FT+ +I+ + +K S W S
Sbjct: 328 FNFFKVNPFTKSTYKNNIIFQILFRWKGSVWKS 360
>Z78542-6|CAB01749.2| 695|Caenorhabditis elegans Hypothetical
protein F20D1.7 protein.
Length = 695
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 55 IAIAAMAAVTNLSNVLKN-GNDNFTARMFTEVV-KNNPGKSVVLSAFSVLPPLAQLALAS 228
+A+ ++ + N+L+N G D+ R V+ +NN KS+ + F +P L L L+
Sbjct: 124 MALTSLLELDLSDNMLENLGADSIHIRSIQRVILRNNQIKSIGVHVFRYMPTLKMLDLSG 183
Query: 229 DGET 240
+ T
Sbjct: 184 NNMT 187
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +1
Query: 64 AAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETH 243
A A ++ V++N D + R+ T VV + S V++A S+ L +A G TH
Sbjct: 1202 ATSALDSDSEKVVQNALDTASERLSTVVVAHR--LSTVVNADSIAV-LKNGKVAEQG-TH 1257
Query: 244 EELLKLSASLTTMLYEQNSRVKAVI 318
EELL+ + ++ +Q +V+ +I
Sbjct: 1258 EELLRKRSIYWRLVQKQGIQVETLI 1282
>Z93383-11|CAI58635.1| 279|Caenorhabditis elegans Hypothetical
protein F54B8.16 protein.
Length = 279
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 146 TSVNILAVKLSFPFLSTLERFVTAAIAAMAIVNKQMIVFMFV 21
TSV + +K +F F+ TLERF++ N++ I F ++
Sbjct: 87 TSVTMGIIKGTFAFMITLERFISVFFPIHYRNNRRKIPFYWI 128
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 144 FGKHSGCEVIVSIFEYIREICDG--CHCRDG---DSKQTNDCLHV 25
FG + GC+ I + ++ DG CHCRDG D + +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133
>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
protein F57C7.4 protein.
Length = 1484
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 139 TEVVKNNPGKSVVLSAFSVLPPLAQLAL 222
T ++KN P KS V +F++ P QLA+
Sbjct: 674 TTIIKNVPSKSDVFVSFTIPPAGTQLAM 701
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 144 FGKHSGCEVIVSIFEYIREICDG--CHCRDG---DSKQTNDCLHV 25
FG + GC+ I + ++ DG CHCRDG D + +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,070
Number of Sequences: 27780
Number of extensions: 265259
Number of successful extensions: 869
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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