Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10959X
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981...    32   0.22 
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389...    30   0.67 
09_02_0338 + 7426999-7428322,7428390-7428646                           28   3.6  
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342...    28   3.6  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   4.7  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   6.2  
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461     27   8.2  

>01_01_1215 +
           9815918-9816218,9816772-9816912,9816988-9817106,
           9817922-9818191,9818330-9818369,9818519-9818616,
           9818745-9818825
          Length = 349

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 171 SRARVQLSGNSGRKHSRCCTS-ILRKFSGGSIVSQLTAAAMVAPTP*GD 314
           S++ V LS  +GRK  R C+  ++R     SI + LT+AA+V P P GD
Sbjct: 137 SQSIVSLSSFAGRKRIRVCSGFVIRWNDSTSIGTILTSAALVRP-PCGD 184


>04_03_0985 -
           21438036-21438116,21438373-21438495,21438903-21438995,
           21439176-21439388,21439589-21439687,21440248-21440317,
           21442549-21442619,21442817-21442954,21443034-21443132,
           21444061-21444144,21444268-21444324,21444594-21444683,
           21444886-21445026,21445778-21445882,21445962-21446114,
           21446215-21446316,21446404-21446562,21447039-21447222,
           21447336-21447418,21447523-21447588,21447736-21447793,
           21447903-21448003,21448269-21448355,21449063-21449185,
           21449285-21449364,21449857-21450066,21450159-21450270,
           21450709-21450927,21451356-21451726,21451866-21451965,
           21452544-21452752,21453232-21453337,21453435-21453767
          Length = 1439

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 147 GSVDSISGSRARVQLSGNSGRKHSRCCTSI-LRKFSGGSIVSQLT 278
           GS DS+ G + R+  + N   K   C T I LRK SG + +S +T
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSGNNDLSDVT 712


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 166 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 26
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_03_0634 +
           16432679-16433076,16433358-16433610,16433993-16434291,
           16434553-16434729,16435001-16435621,16435690-16435784,
           16436000-16436088,16436185-16436250,16436475-16437026,
           16437879-16437953,16438305-16438375,16438456-16438513,
           16441506-16442048
          Length = 1098

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 156 DSISGSRARVQLSGNSGRKHSRCCTSILRKFSGGSIVSQLTAAAMVA 296
           D  + +R R +  G +  K  RCC +ILRK S G   S   + A+++
Sbjct: 127 DISNKARERSRAYGAAVTKIERCCPNILRKRSRGDGSSNERSTALLS 173


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 51  RIARREQKLKEHGASSCISGKRGRRC 128
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 163 MESTDPQCHILQHRRPRLPL 104
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
          Length = 353

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 57  ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 170
           A RE  + ++G A    +   G R  N W  G  DS+SG
Sbjct: 44  ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,210,404
Number of Sequences: 37544
Number of extensions: 219397
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)