Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10959X
         (422 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   29   2.1  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   27   4.8  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   6.4  
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 126 CCNIWHWGSVDSISGSRARVQLSGNSGRKHSRCCTSILRK 245
           C  ++H G+++ I   + R+Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 186 QLSGNSGRKHSRCCTSILRKFSGGSIVSQLTAAAM 290
           Q++G +G++ +  C  ++R+F G  + SQL+  A+
Sbjct: 134 QVNGKNGQEET--CEDLVREFEGNGLFSQLSLEAL 166


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 178 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 53
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 60  RREQKLKEHGASSCISGK-RGRRCCNIWHWGSVDSISGSRARVQLSGNSGRKHSRCCTSI 236
           + +Q+ ++ G  +CI    +    CNIWH  ++ ++ G + +       G    R     
Sbjct: 106 KTKQECQKEGYEACIVNTIKSGTYCNIWHIFALSNVVGCQIQSVYPEVVGSLIDR----- 160

Query: 237 LRKFSGGSIVSQLTAAAMVA 296
              F  G I S++  + MVA
Sbjct: 161 -HTFKNGRITSEVVRSPMVA 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,584,914
Number of Sequences: 59808
Number of extensions: 239270
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)