Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10959X
         (422 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07790.1 68418.m00892 expressed protein                             29   1.3  
At4g15840.1 68417.m02409 expressed protein                             27   4.0  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.0  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   5.2  
At3g20820.1 68416.m02633 leucine-rich repeat family protein cont...    27   6.9  
At2g22840.1 68415.m02712 expressed protein identical to transcri...    26   9.1  

>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 93  SSCISGKRGRRCCNIWHWGSVDSISGSRARVQLSGNSGRKHSRCCTSI 236
           S  +  KR RR   +   G+   +S + A V +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 162 ISGSRARVQLSGNSGRKHSRCCTSILRKFSGGSIVS 269
           +SGS    Q S NS     R CTS++ K + GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDK-TEGSVVA 149


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 72  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 170
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 166 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 20
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At3g20820.1 68416.m02633 leucine-rich repeat family protein
           contains similarity to Cf-2.1 [Lycopersicon
           pimpinellifolium] gi|1184075|gb|AAC15779; contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 365

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 117 GRRCCNIWHWGSVDSISGSRARVQLSGNS 203
           G+ CC+ W+  S DS++   A + L G S
Sbjct: 48  GQDCCHNWYGISCDSLTHRVADINLRGES 76


>At2g22840.1 68415.m02712 expressed protein identical to
           transcription activator GRL1 [Arabidopsis thaliana]
           GI:21539880 (unpublished); supporting cDNA
           gi|21539879|gb|AY102634.1|
          Length = 530

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 144 WGSVDSISGSRARVQLSGNSGRKHSRCCTSILRKFSGGSIVSQLTAAAMV 293
           WG+ +S+ G    V  S  +  K     T +L+K + GS+ +  +A++ +
Sbjct: 451 WGNNNSMGGPLGEVLNSTTNSPKFGSSPTGVLQKSTFGSLSNSSSASSTI 500


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,621,162
Number of Sequences: 28952
Number of extensions: 159675
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)