Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10958X
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0269 + 16265191-16265472,16265574-16266149 29 0.58
05_03_0618 - 16262826-16263097,16263111-16263183 27 2.3
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 3.1
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32... 27 3.1
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 27 4.1
02_02_0724 + 13349419-13349641,13349880-13349974,13350366-133506... 27 4.1
12_02_0315 - 17417161-17417401,17419426-17419616 26 7.1
09_02_0338 + 7426999-7428322,7428390-7428646 26 7.1
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029 26 7.1
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 25 9.4
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 167 MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKCY 39
M T P C +L++ RPRLPL AP + L R + CY
Sbjct: 157 MARTGPLCLLLENPRPRLPL--AGAPPTIRRRRLEFRRCFNCY 197
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 55 RIARREQKLKEHGASSCISGKRGRRC 132
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 172 GSRARFQLSGNSGRKHSRCCTS 237
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>05_01_0046 +
320600-320631,320694-320733,320871-320957,321282-321378,
321532-321823,321850-321990,322285-322390
Length = 264
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = +1
Query: 10 SYSKLP*ST**HLYLRIARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARF 189
SY K P H + A++ + E S G G + W+W D SGS + F
Sbjct: 75 SYGKNP-----HRKGKSAQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGF 129
Query: 190 QLSGNSGRKHSR 225
Q S SR
Sbjct: 130 QWRDESQSNKSR 141
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 61 ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 174
A RE + ++G A + G R N W G DS+SG
Sbjct: 44 ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82
>02_02_0724 +
13349419-13349641,13349880-13349974,13350366-13350653,
13352838-13352963,13353045-13353204,13354142-13354190,
13354502-13354772,13356071-13356196,13357076-13357231,
13357815-13358058,13358181-13358627,13359348-13359478
Length = 771
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 220 SRCCTSILRKFXAGSIVSQLT*CCHG 297
S CC I +F AG + QL C G
Sbjct: 737 SDCCWDIFGEFLAGCVACQLPPACEG 762
>12_02_0315 - 17417161-17417401,17419426-17419616
Length = 143
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 133 CNIWHWGSVDSISGSRARFQLSGNSGRKHSRC 228
C IW ++ ++ G+++ F L+G RC
Sbjct: 16 CGIWQKAAMVALQGNKSWFGLAGGGATVRLRC 47
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -2
Query: 170 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKCYYVD 30
LM C L HR P L + L A L+AI K YY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
Length = 80
Score = 25.8 bits (54), Expect = 7.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 238 CLCSSGCASCRYS 200
C C +GC C+YS
Sbjct: 14 CQCGNGCGGCKYS 26
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 151 GSVDSISGSRARFQLSGNSGRKHSRCCTSI-LRKFXAGSIVSQLT 282
GS DS+ G + R + N K C T I LRK + +S +T
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSGNNDLSDVT 712
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,779,651
Number of Sequences: 37544
Number of extensions: 131026
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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