Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10958X
         (315 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   1.4  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   1.8  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   2.4  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   3.2  
SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)                  26   5.6  
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)                     26   5.6  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   26   7.4  
SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)                      26   7.4  
SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 130 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 249
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 142 WHWGSVDSISGSRARFQLSGNSGRKHSR 225
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 142 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 246
           + W  VDSI+ S+A+F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 182 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 57
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
          Length = 439

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 307 RGGYHGSITSTVT--QCCRP*ISVVCLCSSGCASCR 206
           R  Y G+   T+   +CC P     C CSSG  SCR
Sbjct: 141 RAPYTGTQCDTIKCPECCPP---ETCDCSSGHQSCR 173


>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 535

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 314 LMAWGLPWQHHVNCDTMLPAXNFRSM 237
           L  +G+PW + +NC   L   N R+M
Sbjct: 117 LTEFGIPWPNPLNCTRFLVRNNERNM 142


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +1

Query: 175 SRARFQLSGNSGRKHSRCCTSILRKFXAGSIVSQLT 282
           +++ FQ++G +G++ +  C  ++R+F    + SQL+
Sbjct: 129 AKSFFQVNGKNGQEET--CEDLVREFEGNGLFSQLS 162


>SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)
          Length = 852

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 206 LFPLS*NRAREPLMESTDPQCHILQH---RRPRLPLMQLEAPC 87
           L  +S N      ME  + Q  ++ H   R PRLP+  +  PC
Sbjct: 580 LIRISYNNPAHTKMEERNDQNPVILHQFPRNPRLPVPNISPPC 622


>SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 133 CNIWHWGSVDSISGSRARF 189
           C + HWGSV + +  RAR+
Sbjct: 35  CQVPHWGSVRTFNVCRARY 53


>SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 154 SVDSISGSRARFQLSGNSGRKHSRCCTSILRKFXAGSI 267
           S+ SI   RARF  +  +       CTS++ +F A  +
Sbjct: 34  SLFSIDALRARFSGNALAASSKEEDCTSVIGRFNANGV 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,883,547
Number of Sequences: 59808
Number of extensions: 166101
Number of successful extensions: 319
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)