Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10958X
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.29 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   6.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.29
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 11  RTLNFLNQHSSIY 49
           RTLN LN H SIY
Sbjct: 412 RTLNSLNNHKSIY 424


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 104 QLEAPCSFNFCSLRAIRRY 48
           + +   SF  C L+A+R Y
Sbjct: 131 ECDVALSFKLCMLKAMRNY 149


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 20  NFLNQHSSIYTCVS 61
           N   +HS  YTCV+
Sbjct: 678 NLAAEHSGDYTCVA 691


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -3

Query: 124 DRVYH*CS*KPHVPLIFVLFER 59
           + +Y+ C  +P++ + FV+  R
Sbjct: 207 NEIYYNCCPEPYIDITFVVIIR 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,662
Number of Sequences: 438
Number of extensions: 1272
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)