Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10958X
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             30   0.37 
At5g27340.1 68418.m03264 hypothetical protein                          28   1.1  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   2.0  
At5g07790.1 68418.m00892 expressed protein                             27   2.6  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   2.6  
At1g68430.1 68414.m07817 expressed protein                             27   3.5  
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro...    26   6.1  
At2g33710.1 68415.m04132 AP2 domain-containing transcription fac...    26   6.1  
At3g20820.1 68416.m02633 leucine-rich repeat family protein cont...    25   8.1  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 166 ISGSRARFQLSGNSGRKHSRCCTSILRKFXAGSIVS 273
           +SGS   FQ S NS     R CTS++ K   GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDK-TEGSVVA 149


>At5g27340.1 68418.m03264 hypothetical protein 
          Length = 238

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 210 QEAQPLLHKHTTEIXGRQHCVTVDVMLPW*P 302
           +E   LL     EI  R HC  +D+ L W P
Sbjct: 110 EEFDDLLLTKVREIVSRSHCKDIDIELDWCP 140


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 76  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 174
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 97  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 240
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 170 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKCYYVD*G 24
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At1g68430.1 68414.m07817 expressed protein
          Length = 146

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 207 RQEAQPLLHKHTTEIXGRQ 263
           R+E QPL+H H  ++ GR+
Sbjct: 53  RREQQPLIHHHHKDVAGRK 71


>At4g27370.1 68417.m03929 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1126

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +1

Query: 76  KLKEH-GASSCISGKRGR 126
           KLK+H  A+SC  G+RGR
Sbjct: 610 KLKQHLNANSCFKGERGR 627


>At2g33710.1 68415.m04132 AP2 domain-containing transcription factor
           family protein similar to RAP2.6 (GI:17065542)
           {Arabidopsis thaliana}
          Length = 218

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 193 LSGNSGRKHSRCCTSILRKFXAGSIVSQLT 282
           ++GN   K   CC S L +      VS+LT
Sbjct: 13  MAGNREEKKELCCCSTLSESDVSDFVSELT 42


>At3g20820.1 68416.m02633 leucine-rich repeat family protein
           contains similarity to Cf-2.1 [Lycopersicon
           pimpinellifolium] gi|1184075|gb|AAC15779; contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 365

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 121 GRRCCNIWHWGSVDSISGSRARFQLSGNS 207
           G+ CC+ W+  S DS++   A   L G S
Sbjct: 48  GQDCCHNWYGISCDSLTHRVADINLRGES 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,982,502
Number of Sequences: 28952
Number of extensions: 98666
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)