Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10956X
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    64   6e-12
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    60   1e-10
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    28   0.66 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   2.0  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    24   8.1  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    24   8.1  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 64.5 bits (150), Expect = 6e-12
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS
Sbjct: 3   IDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62

Query: 181 VSRLA--RHMKKPTREGLIAVVVGTVT 255
           +S++A     K  + EG   V+VGTVT
Sbjct: 63  ISKIAALTSRKSASLEGKTTVIVGTVT 89



 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 24/57 (42%), Positives = 31/57 (54%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLVQ 413
           G   +D RL  +PK++VAAL  T+              T DQL LRAPTG  TVL++
Sbjct: 86  GTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLR 142


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS
Sbjct: 3   IDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62

Query: 181 VSRLA--RHMKKPTREGLIAVVVGTVT 255
           +S++A     K  + +    VVVGTVT
Sbjct: 63  ISKIAALTSRKSASSQNKTTVVVGTVT 89



 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 23/57 (40%), Positives = 31/57 (54%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLVQ 413
           G   +D R+  +PK+++AAL  T+              T DQL LRAPTG  TVLV+
Sbjct: 86  GTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVR 142


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 305 MKSSHRHLRYLVQSHVIVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRL 153
           +K+S  HL   +Q  +++       + P  + +++WR +   E    +IRL
Sbjct: 231 LKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRL 281


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -2

Query: 327 VHELFR*HEEQPPSSSVSCTVSRHCDCPHYHGNQTLTSWLL 205
           VH+ +  + E+P  S  +  +  H +    +G + LT W++
Sbjct: 26  VHQFYWTYTEEPHKSRRAAILKAHPEIASLNGYEPLTKWIV 66


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 361 KVRIPPPAAKMRARAFSVT*RAATVIFGI 275
           K+  PPP+A+ RA    +  R+  +  GI
Sbjct: 311 KIEFPPPSAEARAEILRIHSRSMNLTRGI 339


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -2

Query: 246 PHYHGNQTLTSWLLHVARQTRHRDWWPVDTAH 151
           P YH    +   L+H+    R  +W P    H
Sbjct: 220 PTYHFANVVDDHLMHITHVIRGEEWVPSTIKH 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,841
Number of Sequences: 5004
Number of extensions: 32701
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)