Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10956X
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 66 8e-12
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 64 4e-11
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 63 1e-10
04_01_0249 - 3284107-3286377 30 0.84
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 1.5
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 27 4.5
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 5.9
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 5.9
03_02_0611 + 9842550-9843035,9844313-9844416,9844586-9844814,984... 27 7.8
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 7.8
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 66.5 bits (155), Expect = 8e-12
Identities = 34/78 (43%), Positives = 47/78 (60%)
Frame = +1
Query: 22 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
++K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 202 MKKPTREGLIAVVVGTVT 255
M+ +E IAV+VGTVT
Sbjct: 71 ME--GKENQIAVIVGTVT 86
Score = 45.2 bits (102), Expect = 2e-05
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVL 407
G +D R+Y++P M VAAL TE TFDQL LRAP G+ T +
Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYI 137
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 64.1 bits (149), Expect = 4e-11
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +1
Query: 22 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
++K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 202 MKKPTREGLIAVVVGTVT 255
M + E IAV+VGTVT
Sbjct: 71 M-EGKEENNIAVIVGTVT 87
Score = 47.2 bits (107), Expect = 5e-06
Identities = 25/57 (43%), Positives = 31/57 (54%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLVQ 413
G +D R+ +IPKM V AL TE TFDQL LRAP G+ TVL++
Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLR 140
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 62.9 bits (146), Expect = 1e-10
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = +1
Query: 22 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 202 M--KKPTREGL----IAVVVGTVT 255
M K P R + IAV+VGTVT
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVT 94
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/57 (43%), Positives = 32/57 (56%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLVQ 413
G +D R+Y++P M VAAL TE TFDQL LRAP G+ TVL++
Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLR 147
>04_01_0249 - 3284107-3286377
Length = 756
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 133 VLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTMT*DCTRY 279
++RRL +S +N + R+ + KKPTR + + +G + +CTRY
Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 245 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 141
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 27.5 bits (58), Expect = 4.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 279 VSCTVSRHCDCPHYHGN 229
+ C+ S+ C CPHY G+
Sbjct: 1 MGCSPSKVCSCPHYKGS 17
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 227 KPSRVGFFMWRAKRDTEIG 171
+PS+V FFMW A+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 135 STPALYEPYQPATNLCV-SFGAPHEEANS 218
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>03_02_0611 +
9842550-9843035,9844313-9844416,9844586-9844814,
9846121-9846270
Length = 322
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 335 QNACTSFFGNMKSSHRHLRYLVQSHVIVTVPTTTAIKPSRVGFFMWRAKRDTEI 174
Q S G +S L Y+ VI+ +P T ++ + VG + AK+DT I
Sbjct: 189 QGILLSSEGEKLNSMNLLLYMAPIAVILLLPATIFMEDNVVGITIELAKKDTTI 242
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 263 ETVQDTEDDGGCSSCYRKSS 322
E VQ +DD G S C R+SS
Sbjct: 253 ENVQSDDDDSGPSQCMRESS 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,688,581
Number of Sequences: 37544
Number of extensions: 235850
Number of successful extensions: 601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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