Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10956X
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               74   4e-14
SB_30116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   4.6  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   27   6.1  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)           27   8.1  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 39/85 (45%), Positives = 50/85 (58%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S
Sbjct: 110 IDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLS 169

Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
           ++RL R MK    +  I VVVG++T
Sbjct: 170 LARLVRKMKASGHKDKICVVVGSIT 194



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +3

Query: 231 CRGSGDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLV 410
           C   G   +D R++++P + + AL  +E              TFDQL LRAP G+ TVL+
Sbjct: 187 CVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLL 246

Query: 411 Q 413
           Q
Sbjct: 247 Q 247


>SB_30116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 302 KSSHRHLRYLVQSHVIVTVPTTTAIKPSRVGFFMWRAKRD 183
           KS   H   +   H++VTVP T   KP ++ +  +R  RD
Sbjct: 188 KSGRVHKGLVRSDHLVVTVPPTIPTKP-QIRYVTFRDTRD 226


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 243 HYHGNQTLTSWLLHVARQTRHRDWW 169
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 30  SSAHRS*ISRYLLEVTCKALQILGQT 107
           ++ HR  ++RY+   TC  L + G T
Sbjct: 84  ATCHRQHVTRYMSHATCHTLHVTGNT 109


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 234 GNQTLTSWLLHVARQTRHRDWWP 166
           G  T + W LH ++Q RH+  WP
Sbjct: 177 GIDTGSLWQLHYSQQWRHKGRWP 199


>SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)
          Length = 1142

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = -3

Query: 275 LVQS-HVIVTVPTTTAIKPSR 216
           LV+S H++VTVP  + +KPSR
Sbjct: 408 LVRSDHLVVTVPPLSPVKPSR 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,666
Number of Sequences: 59808
Number of extensions: 264244
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)