Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10956X
         (415 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18 pro...    97   2e-20
BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18 p...    97   2e-20
BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18 p...    97   2e-20
AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18 p...    97   2e-20
BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18 p...    95   8e-20
DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18 p...    73   5e-13

>L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 48/85 (56%), Positives = 56/85 (65%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           +DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3   VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62

Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
           +SR+ R MK P RE   AVVVGT+T
Sbjct: 63  LSRMIRKMKLPGRENKTAVVVGTIT 87



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLV 410
           G   +DVR+ ++PK+ V AL VT +             TFDQL L +P G  TVL+
Sbjct: 84  GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 139


>BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 48/85 (56%), Positives = 56/85 (65%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           +DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3   VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62

Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
           +SR+ R MK P RE   AVVVGT+T
Sbjct: 63  LSRMIRKMKLPGRENKTAVVVGTIT 87



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLV 410
           G   +DVR+ ++PK+ V AL VT +             TFDQL L +P G  TVL+
Sbjct: 84  GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 139


>BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 48/85 (56%), Positives = 56/85 (65%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           +DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3   VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62

Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
           +SR+ R MK P RE   AVVVGT+T
Sbjct: 63  LSRMIRKMKLPGRENKTAVVVGTIT 87



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLV 410
           G   +DVR+ ++PK+ V AL VT +             TFDQL L +P G  TVL+
Sbjct: 84  GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 139


>AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 48/85 (56%), Positives = 56/85 (65%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           +DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3   VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62

Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
           +SR+ R MK P RE   AVVVGT+T
Sbjct: 63  LSRMIRKMKLPGRENKTAVVVGTIT 87



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLV 410
           G   +DVR+ ++PK+ V AL VT +             TFDQL L +P G  TVL+
Sbjct: 84  GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 139


>BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 95.1 bits (226), Expect = 8e-20
 Identities = 47/85 (55%), Positives = 55/85 (64%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           +DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP+ 
Sbjct: 3   VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLC 62

Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
           +SR+ R MK P RE   AVVVGT+T
Sbjct: 63  LSRMIRKMKLPGRENKTAVVVGTIT 87



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLV 410
           G   +DVR+ ++PK+ V AL VT +             TFDQL L +P G  TVL+
Sbjct: 84  GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 139


>DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18
           protein.
          Length = 164

 Score = 72.5 bits (170), Expect = 5e-13
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +1

Query: 109 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 255
           TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE   AVVVGT+T
Sbjct: 16  TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTIT 64



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLV 410
           G   +DVR+ ++PK+ V AL VT +             TFDQL L +P G  TVL+
Sbjct: 61  GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,878,878
Number of Sequences: 237096
Number of extensions: 1271501
Number of successful extensions: 2204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2204
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)