Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10956X
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...    73   1e-13
AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical...    29   1.3  
U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    27   4.1  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    27   4.1  
AL110485-25|CAB60373.1|  672|Caenorhabditis elegans Hypothetical...    27   7.1  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 39/85 (45%), Positives = 49/85 (57%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+S
Sbjct: 3   IDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLS 62

Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
           +++LAR ++K   E    V + TVT
Sbjct: 63  LAKLARAVQKAGNENKTVVTLSTVT 87



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 24/53 (45%), Positives = 32/53 (60%)
 Frame = +3

Query: 255 NDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLVQ 413
           +D RLY +PK++VAALHVTE              T DQL L++P G+ TV +Q
Sbjct: 88  DDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQ 140


>AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical
           protein C50H11.17 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 159 YQPATNLCVSFGAPHEEANS*GFDCRGSGDSHN 257
           Y+ A NLC++   P E+ANS  F C   G  HN
Sbjct: 229 YEDAFNLCLNEVKPREDANS--FPCFIDGRFHN 259


>U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical
           protein R07G3.7b protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 153 EPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSHNDVRLY 272
           +P +P   L  S    H +A    F+C+GS DS+N  +L+
Sbjct: 64  QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 103


>U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical
           protein R07G3.7a protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 153 EPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSHNDVRLY 272
           +P +P   L  S    H +A    F+C+GS DS+N  +L+
Sbjct: 199 QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 238


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 120 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDS 251
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDS 160


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 120 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDS 251
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDS 244


>AL110485-25|CAB60373.1|  672|Caenorhabditis elegans Hypothetical
           protein Y46G5A.31 protein.
          Length = 672

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +3

Query: 141 PALYEPYQPATNLCVSFGAPHEEANS*GFDC--RGSGDSHNDVRLYKIPKMTVAA 299
           P+ YEP+      C   G P    N  GF C  +   + H    +Y I +   AA
Sbjct: 527 PSYYEPWGYTPAECTVMGIPSVSTNLSGFGCFMQEHVEDHEQKGIYVIDRRHKAA 581


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,777,430
Number of Sequences: 27780
Number of extensions: 196638
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)