Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10956X
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.063
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.45 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   4.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   9.6  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 0.063
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 54  SRYLLEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPA 170
           S Y +  T    Q   QT + Q+  DR++P  Y  Y PA
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPA 432


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 284  DDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCS 385
            +DGGCSS    S+  +   +++N Y     SS S
Sbjct: 924  NDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSS 957



 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 112 LYVWPSICKAL 80
           LY  PSIC AL
Sbjct: 176 LYTTPSICTAL 186


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 194 AKRDTEIGGRLIRLIKSRRRTI 129
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 291 PSSSVSCTVSRHCDCPH 241
           P+ S+ C   RH   PH
Sbjct: 24  PTMSIKCNCKRHVIKPH 40


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 112 LYVWPSICKAL 80
           LY  PSIC AL
Sbjct: 171 LYTTPSICTAL 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,683
Number of Sequences: 438
Number of extensions: 2333
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)