Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10956X
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi...    64   4e-11
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ...    60   8e-10
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)            41   4e-04
At2g02640.1 68415.m00203 DC1 domain-containing protein   contain...    31   0.31 
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf...    28   2.2  
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r...    28   2.9  
At1g32190.1 68414.m03959 expressed protein                             27   3.8  

>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
           to GB:P42791
          Length = 187

 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 32/77 (41%), Positives = 47/77 (61%)
 Frame = +1

Query: 25  RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 204
           +K +RT  KS D+               TN+KFN ++L+RLFMS++N+ P+S+SRL   M
Sbjct: 12  KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71

Query: 205 KKPTREGLIAVVVGTVT 255
               +E  IAV+VGT+T
Sbjct: 72  --TGKEDKIAVLVGTIT 86



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 24/57 (42%), Positives = 33/57 (57%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLVQ 413
           G   +D+R+++IP M V AL  TE+             TFDQL LRAP G+ TVL++
Sbjct: 83  GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139


>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
           ribosomal protein L18, Arabidopsis thaliana,
           SWISSPROT:RL18_ARATH
          Length = 187

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 29/77 (37%), Positives = 46/77 (59%)
 Frame = +1

Query: 25  RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 204
           +K +RT  KS D+               +N+ FN ++L+RLFMS++N+ P+S+SRL   M
Sbjct: 12  KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71

Query: 205 KKPTREGLIAVVVGTVT 255
               ++  IAV+VGT+T
Sbjct: 72  --TGKDDKIAVLVGTIT 86



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 24/57 (42%), Positives = 33/57 (57%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPTGKKTVLVQ 413
           G   +D+R+++IP M V AL  TE+             TFDQL LRAP G+ TVL++
Sbjct: 83  GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139


>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
          Length = 135

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = +1

Query: 151 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 255
           MS++N+ P+S+SRL R+M    ++G IAV+VGTVT
Sbjct: 1   MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVGTVT 33



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKXXXXXXXXXXXXXTFDQLGLRAPT-GKKTVLVQ 413
           G   +DVR+  +P +TV AL  TE              TFDQL L  PT  + TVL++
Sbjct: 30  GTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLR 87


>At2g02640.1 68415.m00203 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 296 CSSCYRKSSCTHFGCWRRNSYF 361
           CS+C RKS+   + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444


>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 883

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 260 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 385
           R+  + +E  GGC+SC    KS  T   C  R+  + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188


>At3g59820.1 68416.m06675 calcium-binding mitochondrial
           protein-related contains weak similarity to
           Calcium-binding mitochondrial protein Anon-60Da
           (Swiss-Prot:P91927) [Drosophila melanogaster]
          Length = 755

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 124 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 231
           +Q V    + S INRPP+    +  H     R+GL+
Sbjct: 34  SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 296 CSSCYRKSSCTHFGCWR 346
           CSSC+ K  C    CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,206,143
Number of Sequences: 28952
Number of extensions: 183244
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)