Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10954
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    36   0.006
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    28   1.2  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   3.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   6.6  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   6.6  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   8.8  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 442 DGASACLVMSEAKAKELGLKP 504
           DGASA ++MS AK KELGLKP
Sbjct: 254 DGASALVLMSAAKVKELGLKP 274


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 522 SHTSL-RIPWTSCCWGP 569
           SHT L RIP TSC W P
Sbjct: 244 SHTGLSRIPVTSCAWNP 260


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 497 SNRSYLRDFTYVAQDPVDQLL-LGPAYGIPKILDKV 601
           SN++ LR  TY+  D  D++L +G    I KI+D++
Sbjct: 262 SNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 506 SYLRDFTYVAQDPVDQLLLGPAYGIPKILD 595
           +++  F Y+ +D V QLL+  A+G+  + D
Sbjct: 816 THIHQFLYIGKDAVPQLLI-DAFGVNSLAD 844


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 506 SYLRDFTYVAQDPVDQLLLGPAYGIPKI 589
           +YL D+T+   DP  +     A+ +PK+
Sbjct: 229 TYLYDYTFYFSDPSPKKYAADAFSLPKL 256


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 509 SFGLRPSSLAFASDITRQAEAPSV 438
           +FG RPSS  F  + TR + AP V
Sbjct: 15  TFGKRPSSFEFIVNKTRFSSAPVV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,929
Number of Sequences: 5004
Number of extensions: 46867
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)