Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10954
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270...    28   5.2  
09_06_0256 + 21887666-21888670                                         28   6.8  
01_05_0054 - 17619757-17619802,17620296-17620440,17620686-176207...    28   6.8  
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191           28   6.8  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     27   9.0  
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491...    27   9.0  

>04_04_1093 +
           30825722-30826168,30826457-30826608,30826926-30827048,
           30827240-30827384,30828032-30828093,30828373-30828586,
           30829671-30830585,30830827-30831076,30831164-30831432
          Length = 858

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 572 RRAPTAAG-PRDPERRM*SPAGSFGLRPSSLAFASDITRQAEAPSV 438
           R +P A G PR   RR  SP+ S  L PSS A AS     +  P V
Sbjct: 21  RHSPAALGTPRS--RRRHSPSPSLALTPSSSASASASASTSSRPKV 64


>09_06_0256 + 21887666-21888670
          Length = 334

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 262 SQWVVILMVDSAKTALARASVSNRPGLSPVSSPN 363
           S WV I    SA  A+  A+ + +PG S   +PN
Sbjct: 53  SDWVDIAHEVSAHCAMENAAATGKPGSSTAKTPN 86


>01_05_0054 -
           17619757-17619802,17620296-17620440,17620686-17620743,
           17620822-17620932,17621020-17621129,17622529-17622736
          Length = 225

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 443 TAPPPAS*CPRQRPRSSASNRSYLRDFTYVAQDPVDQ 553
           +APPP    P +R   +A     LRD T+  +DPV++
Sbjct: 14  SAPPPPRRTPLERTADAAEELYRLRD-TFFPRDPVEK 49


>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
          Length = 539

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 513 CGTSHTSLRIPWTSCCWGPPTAFPRSWTKSASRST 617
           CG    +   PWT  C+   T   R+ TKS + ST
Sbjct: 238 CGHRRRAAHEPWTFACFRTVTITARADTKSPASST 272


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = +2

Query: 443 TAPPPAS*CPRQRPRSSA------SNRSYLRDFTYVAQDPVDQLLLGPAYG 577
           T  PP S  P+Q P S A      S  S   +F +   D  D+L++   YG
Sbjct: 363 TRAPPLSSAPKQHPESEAPPLAPSSAPSPREEFAWPLTDEEDELIINVLYG 413


>03_02_0011 -
           4909292-4909434,4909520-4909626,4910100-4910171,
           4910713-4910803,4911136-4911272,4911377-4911417,
           4911681-4911746,4912756-4913082
          Length = 327

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 167 VNALSCILLPL*ADEHTAHLILGGYCRPWTSAMPETKPCLPLSLYGHCTNG 15
           V ALS  L+ +  +E TAHL+LG +   W  +       L L  Y  C NG
Sbjct: 211 VEALSAALI-ICGEEETAHLLLGKF--KWGHSFLSVNREL-LKAYSQCENG 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,294,540
Number of Sequences: 37544
Number of extensions: 358002
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)