Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10954
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            41   0.001
SB_14249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_11033| Best HMM Match : Chordopox_RPO7 (HMM E-Value=2.6)            28   7.0  
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)                 27   9.2  
SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +1

Query: 433 YQTDGASACLVMSEAKAKELGLKPK 507
           + TDGASACLVM E KA  +GLKPK
Sbjct: 101 FLTDGASACLVMCEEKALSMGLKPK 125



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 560 LGPAYGIPKILDKVGLKVN 616
           L PAY  PK+L+K GLK++
Sbjct: 128 LSPAYATPKLLEKTGLKLS 146


>SB_14249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 480 GQGARPQTEATCGTSHTSLRIPWTSCCWGPPTAFPRSWTKSASR 611
           G  A     +T  +S   + I +  CC  P + F R WT S  R
Sbjct: 20  GLSAGAGIASTLASSSMGMSISFIICCISPSSIFIRFWTASLCR 63


>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 440  RTAPPPAS*CPRQRPRSSASNRSYLRDFTYVAQDPV 547
            RT+ P A   PR+ PR S   R+  R  + V++ PV
Sbjct: 1108 RTSSPDAEYSPRESPRESLQQRTPRRSHSEVSRLPV 1143


>SB_11033| Best HMM Match : Chordopox_RPO7 (HMM E-Value=2.6)
          Length = 342

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 112 WAVCSSAYKGNKIQLNALTCLN*FK 186
           W +   AY G ++QLN LT L+ F+
Sbjct: 230 WRMFPLAYDGKRVQLNTLTSLSYFR 254


>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
          Length = 496

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 445 GASACLVMSEAKAKELGLKPKLPAGLHIRRSGSRGPAAVGARLR 576
           GAS+      AK       P+ P G + + S S GP+A G   R
Sbjct: 441 GASSSTETPSAKGFPASATPEFPLGSYSQMSSSFGPSARGGSAR 484


>SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 136 CRQTSIRPT*YWVVTVAHGLQQCQRQSPAYR 44
           C +TSI    YWVV +     +   QS +YR
Sbjct: 42  CEKTSISDIKYWVVFIVKDCHENNDQSASYR 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,250,643
Number of Sequences: 59808
Number of extensions: 384183
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)