Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10954
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical pr...    60   1e-09
Z81474-6|CAH04697.1|  320|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z81474-3|CAB03903.3|  298|Caenorhabditis elegans Hypothetical pr...    31   0.87 

>M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical
           protein B0303.3 protein.
          Length = 448

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/35 (74%), Positives = 30/35 (85%)
 Frame = +2

Query: 503 RSYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGL 607
           ++YLRD+ YVAQDP DQLLL PAY IPK+LDK GL
Sbjct: 308 KAYLRDYLYVAQDPKDQLLLSPAYVIPKLLDKAGL 342



 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 433 YQTDGASACLVMSEAKAKELGLKPK 507
           Y TDGASA L+M+E  A   G KPK
Sbjct: 284 YLTDGASAALIMTEEYALANGYKPK 308


>Z81474-6|CAH04697.1|  320|Caenorhabditis elegans Hypothetical
           protein C18D4.6c protein.
          Length = 320

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 502 PKLPAGLHIRRSGSRGPAAVGARLRHSQDLGQSR 603
           P L  G H  +  +RGPA VG   RH++  G +R
Sbjct: 207 PPLLGGAHPGQFRARGPAGVGVVSRHTRQFGAAR 240


>Z81474-3|CAB03903.3|  298|Caenorhabditis elegans Hypothetical
           protein C18D4.6a protein.
          Length = 298

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 502 PKLPAGLHIRRSGSRGPAAVGARLRHSQDLGQSR 603
           P L  G H  +  +RGPA VG   RH++  G +R
Sbjct: 207 PPLLGGAHPGQFRARGPAGVGVVSRHTRQFGAAR 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,860,428
Number of Sequences: 27780
Number of extensions: 276135
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)