Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10953
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6X8H4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_A2Q1T0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  

>UniRef50_A6X8H4 Cluster: Putative uncharacterized protein; n=1;
           Ochrobactrum anthropi ATCC 49188|Rep: Putative
           uncharacterized protein - Ochrobactrum anthropi (strain
           ATCC 49188 / DSM 6882 / NCTC 12168)
          Length = 1112

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -3

Query: 248 PPSTTTVDTLDLRQML*YIFLINSGDAPQFSESCIFY 138
           PPS  TVD  D  Q++ ++F + S +APQ ++S ++Y
Sbjct: 752 PPSGQTVDPTDNSQIITFVFRLLSNNAPQQNQSILWY 788


>UniRef50_A2Q1T0 Cluster: Putative uncharacterized protein; n=1;
           Medicago truncatula|Rep: Putative uncharacterized
           protein - Medicago truncatula (Barrel medic)
          Length = 469

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = -1

Query: 481 DKTVSWSRSSTNVSIYYNIV*FIVSEYYC*LNRLTLFVENLVPTNLMKQIN 329
           D  +S+ RSS+ + +Y N   FI  +YY  L  L  FV+N+ P N++  ++
Sbjct: 292 DPIISYLRSSSQLKVYMNF--FI--DYYHHLCNLREFVQNIKPQNVLSSLS 338


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,105,446
Number of Sequences: 1657284
Number of extensions: 9175660
Number of successful extensions: 16305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16296
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)