Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10953
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    29   0.54 
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    28   1.3  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   5.1  

>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 467 RHCFILKFLQRLL-SKLH*TWNGMTRPHGGKTAARALITGHL 589
           R CF+ K  + +  SK+   W  ++RPHG     RA  T +L
Sbjct: 49  RICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNL 90


>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 467 RHCFILKFLQRLL-SKLH*TWNGMTRPHGGKTAARALITGHL 589
           R C++ K  + +  SK+   W  + RPHG   A RA    +L
Sbjct: 49  RVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNL 90


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 516 CNL--ESNRCKNL-RIKQCRGRARRLTSRFII 430
           CNL    N C+ + +  Q RGRAR + S+F+I
Sbjct: 442 CNLVIRFNICRTVTQYVQSRGRARAMASKFLI 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,597
Number of Sequences: 5004
Number of extensions: 41032
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)