Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10953
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.0  
SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  

>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 444 TLVDERDHDTVLSLNSYNDYSLNYIKRGME*RALTAARRQRGRSSPV 584
           T++DE DH  V + NSY        K G+    ++AA R  G +  +
Sbjct: 225 TILDENDHAPVFTQNSYLGSIAENTKPGVSILRVSAADRDSGSNGDI 271


>SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 205 ICLRSRVSTVVVEGGSQQAHAXXXXXXHLFVDIPFGTGSCY 327
           +C RS +   +V G  +  H       HL VD+ FG+G C+
Sbjct: 328 VCTRSPLRCRIV-GFLRTPHLYGRYSTHLRVDLDFGSGRCH 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,748
Number of Sequences: 59808
Number of extensions: 295156
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)