Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10953
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   5.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 523  VEWNDAPSRRQDGSEGAH 576
            +E N+APSR+     G H
Sbjct: 1917 IERNEAPSRQTGSGHGGH 1934


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 494 QRLLSKLH*TWNGMTRPHGGKTAARALITGHLT*VEVYRVSQ 619
           +RLL+ L  T+N + RP G ++    L  G LT +++  V +
Sbjct: 25  KRLLNDLLDTYNVLERPVGNESEPLVLSFG-LTLMQIIDVDE 65


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +3

Query: 471 TVLSLNSYNDYSLNYIKRGME*RALTAARRQRGRSSPVT*P 593
           TVL+  S  DYS  +   G   R   A R  R    PV  P
Sbjct: 12  TVLATVSSQDYSQLFAGFGPYIRQAVAMRDPRSNRGPVLFP 52


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 315 WFLLPLICFIKLVGTK 362
           W L  +ICF  LVG K
Sbjct: 190 WILSFVICFPPLVGWK 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,145
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)