Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10952
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 122 5e-29
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 122 6e-29
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 26 5.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 9.5
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.5
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 122 bits (294), Expect = 5e-29
Identities = 55/77 (71%), Positives = 63/77 (81%)
Frame = +2
Query: 26 KSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA 205
K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA
Sbjct: 13 KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRA 72
Query: 206 VARIPRVRGGGTHRSGR 256
+ARIPRV GGGTHRSG+
Sbjct: 73 LARIPRVGGGGTHRSGQ 89
Score = 64.5 bits (150), Expect = 1e-11
Identities = 25/42 (59%), Positives = 37/42 (88%)
Frame = +2
Query: 509 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKGSG 634
KA+ D++KV S++LRAGKGK+RNRR +QR+GPL++FN+ +G
Sbjct: 175 KAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTG 216
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +3
Query: 357 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLR 512
+ +VAA+GVP+L+ ARGH IE+IPE+PLVV D VQ KTK+AV L+ ++
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIK 175
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/27 (81%), Positives = 23/27 (85%), Gaps = 2/27 (7%)
Frame = +1
Query: 250 RSG--AFGNMCRGGRMFAPTKPWRRWH 324
RSG AFGNMCR GRMFAPTK WR+WH
Sbjct: 86 RSGQAAFGNMCRSGRMFAPTKTWRKWH 112
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 122 bits (293), Expect = 6e-29
Identities = 55/77 (71%), Positives = 63/77 (81%)
Frame = +2
Query: 26 KSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA 205
K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA
Sbjct: 13 KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRA 72
Query: 206 VARIPRVRGGGTHRSGR 256
+ARIPRV GGGTHRSG+
Sbjct: 73 LARIPRVGGGGTHRSGQ 89
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +3
Query: 357 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLR 512
+ +VAA+GVP+L+ ARGH IE+IPE+PLVV D VQ KTK+AV L+ ++
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIK 175
Score = 64.1 bits (149), Expect = 2e-11
Identities = 25/42 (59%), Positives = 37/42 (88%)
Frame = +2
Query: 509 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKGSG 634
KA+ D++KV S++LRAGKGK+RNRR +QR+GPL++FN+ +G
Sbjct: 175 KAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAG 216
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/27 (81%), Positives = 23/27 (85%), Gaps = 2/27 (7%)
Frame = +1
Query: 250 RSG--AFGNMCRGGRMFAPTKPWRRWH 324
RSG AFGNMCR GRMFAPTK WR+WH
Sbjct: 86 RSGQAAFGNMCRSGRMFAPTKTWRKWH 112
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +3
Query: 288 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH-IIEKIPELPL 443
+ PH L + AP QP E +V P+ +GH I + PL
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGHPTISNVATPPL 906
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 429 PELPLVVADKVQEINKTKQAVIFLRRLRHGLISLRCTSLSVFV 557
P LP V D V ++N+T+ FL+ +R G L LS +
Sbjct: 197 PPLPHV-DDLVNKVNRTRDFYQFLKDMRKGFRELHRKDLSQLI 238
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 44 PAPSHSSPGAEFG 6
PAPS+ SPG+ FG
Sbjct: 338 PAPSYFSPGSSFG 350
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 491 HLPEAPKAWSDILKVYKSQRL 553
+LP K W D+L++ +SQRL
Sbjct: 365 NLPPNVKIWRDVLELGQSQRL 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,465
Number of Sequences: 5004
Number of extensions: 50174
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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