Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10952
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 104 5e-23
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 104 7e-23
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 33 0.15
08_02_1278 - 25838146-25839411 32 0.46
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 31 0.60
10_02_0199 + 6668902-6669293,6669825-6669882 31 1.1
03_05_0366 - 23505755-23506441 30 1.4
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 3.2
03_06_0733 + 35825541-35826052,35826728-35826871,35828638-358287... 28 7.4
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 9.8
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 9.8
08_02_1437 - 27096364-27097252,27098931-27099022,27099382-270996... 27 9.8
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 27 9.8
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 27 9.8
05_03_0446 + 14111667-14111906,14112011-14112418 27 9.8
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 27 9.8
02_02_0087 - 6650570-6652021 27 9.8
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 27 9.8
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 104 bits (250), Expect = 5e-23
Identities = 48/74 (64%), Positives = 58/74 (78%)
Frame = +2
Query: 35 TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAR 214
T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+R
Sbjct: 20 TDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSR 79
Query: 215 IPRVRGGGTHRSGR 256
IPRV GGGTHR+G+
Sbjct: 80 IPRVPGGGTHRAGQ 93
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/51 (50%), Positives = 38/51 (74%)
Frame = +3
Query: 357 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRL 509
+ ++AAT VP+LV ARGH IE +PELPLV++D + I KT QA+ L+++
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQV 178
Score = 57.2 bits (132), Expect = 1e-08
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +1
Query: 256 GAFGNMCRGGRMFAPTKPWRRWH 324
GAFGNMCRGGRMFAPTK WR+WH
Sbjct: 94 GAFGNMCRGGRMFAPTKTWRKWH 116
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 512 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 619
A++D K S +R GKGKMRNRR I RKGPLI++
Sbjct: 180 AYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVY 215
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 104 bits (249), Expect = 7e-23
Identities = 48/82 (58%), Positives = 58/82 (70%)
Frame = +2
Query: 11 IRHQEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 190
++ E A +P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESW
Sbjct: 11 VKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESW 70
Query: 191 GTGRAVARIPRVRGGGTHRSGR 256
GTGRAV+RIPRV GGGTHR+G+
Sbjct: 71 GTGRAVSRIPRVPGGGTHRAGQ 92
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/51 (49%), Positives = 38/51 (74%)
Frame = +3
Query: 357 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRL 509
+ ++AAT VP+LV ARGH IE +PE PLVV+D ++ I KT Q++ L+++
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQI 177
Score = 57.6 bits (133), Expect = 8e-09
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +1
Query: 256 GAFGNMCRGGRMFAPTKPWRRWH 324
GAFGNMCRGGRMFAPTK WRRWH
Sbjct: 93 GAFGNMCRGGRMFAPTKIWRRWH 115
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +2
Query: 512 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 619
A++D K S +RAGKGKMRNRR I RKGPLI++
Sbjct: 179 AYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVY 214
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 308 GFVGANIRPPRHMLPKAPDRTYEYHHHGH 222
GF + PP+ P+ PD + +HHH H
Sbjct: 30 GFFNILVPPPQSPRPRCPDHQHHHHHHHH 58
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 506 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 399
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -3
Query: 266 PKAPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 156
P P + +HHHGH + Q H G PP
Sbjct: 30 PHDPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 179 AESWGTGRAVARIPRVRGGGTHR 247
A+SW TGRA A + R R GG R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRR 58
>03_05_0366 - 23505755-23506441
Length = 228
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 241
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 242 H 244
+
Sbjct: 168 N 168
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 275 HMLPKAPDRTYEYHH-HGHAEFGRQHVQYPMIQH 177
HM+ P T+++HH HGH FGR H +P H
Sbjct: 136 HMVHDYP-YTHDHHHGHGHHLFGRDH--WPASHH 166
>03_06_0733 +
35825541-35826052,35826728-35826871,35828638-35828709,
35829232-35829739
Length = 411
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 275 HMLPKAPDRTYEYHHHGHAEFGR 207
H AP T YHHH H E R
Sbjct: 59 HQYYPAPQITIPYHHHHHGELRR 81
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 74 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 187
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 68 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 238
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 239 T 241
T
Sbjct: 215 T 215
>08_02_1437 -
27096364-27097252,27098931-27099022,27099382-27099654,
27099872-27100819
Length = 733
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 294 RPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGHII 419
R ++ L+ +A +PP +S G A G PA+ G+ +
Sbjct: 653 RVNDWLSEIAKPTEPPPPQSDADGEEAGGGAPAVANGGGNTV 694
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 303 EALAALAPS--RQPPTAESGLGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINK 476
E +APS + E+G GG V PA + + E +PE+PL+ + + + K
Sbjct: 3 EVCKRVAPSVREEEEEEENGDGGGVD----PAAESSSAKLYEDVPEMPLMALNHISRLCK 58
Query: 477 TKQAVI 494
+ A +
Sbjct: 59 SIDASV 64
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 220 RNSGDSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 92
R+SG T F+ L + H +G+ VLG +N+ ++DQ+
Sbjct: 87 RDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>05_03_0446 + 14111667-14111906,14112011-14112418
Length = 215
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 291 VRPHEALAALAPSRQPPTAESGLGGSVAATG 383
+RP ++LA L+P+R +A +G G + A +G
Sbjct: 114 LRPTKSLAHLSPARASSSAAAGGGSATAPSG 144
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 297 PHEALAALAPSRQPPTAESGLGGSVAATGVPA 392
P A +AP PP G+GG G PA
Sbjct: 1175 PPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPA 1206
>02_02_0087 - 6650570-6652021
Length = 483
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 428 SRASPGCSRQSPGDQQDQTGCHLPEAPKAWSDILKVYKSQRLRAGKGK 571
S A PG SR + GD + T L A AW+ +L V R A +G+
Sbjct: 191 SSAGPGGSRLAAGDARKTTPEALAAAVSAWAFLLTVV-HDRYEAEEGE 237
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 488 CHLPEAPKAWSDILKVYKS 544
CHLPE WS++L++ +S
Sbjct: 1379 CHLPENDPMWSEVLRMKQS 1397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,664,867
Number of Sequences: 37544
Number of extensions: 453611
Number of successful extensions: 1609
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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