Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10952
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               120   8e-28
SB_10373| Best HMM Match : PKD (HMM E-Value=5)                         29   3.3  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.3  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   5.7  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  120 bits (290), Expect = 8e-28
 Identities = 55/66 (83%), Positives = 60/66 (90%)
 Frame = +2

Query: 59  LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 238
           LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGG
Sbjct: 21  LPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGG 80

Query: 239 THRSGR 256
           THRSG+
Sbjct: 81  THRSGQ 86



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = +2

Query: 494 LPEAPKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKGSG 634
           L +A  A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N   G
Sbjct: 167 LLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQG 213



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +1

Query: 256 GAFGNMCRGGRMFAPTKPWRRWH 324
           GAFGNMCRGGRMFAPTK WR+WH
Sbjct: 87  GAFGNMCRGGRMFAPTKTWRKWH 109



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 31/95 (32%), Positives = 47/95 (49%)
 Frame = +3

Query: 366 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLRHGLISLRCTSL 545
           ++AA+ +PAL+ ARGH IEKI E+PLV++D ++ + KT  AV  L+ +       +C   
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDS 183

Query: 546 SVFVLVRVKCATXXXXXXXXXXXXXTKDQGLTRAF 650
                 + K                  DQGL +AF
Sbjct: 184 KKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAF 218


>SB_10373| Best HMM Match : PKD (HMM E-Value=5)
          Length = 230

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -1

Query: 604 SLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLRRLRKMTACLVLLISWTLSATTRGSSGI 425
           +LTL  T     TLT + TL L   + +   L R   +T  L L +S TLS T   + G 
Sbjct: 35  TLTLTLTLTLTLTLTLSVTLTLTLTRTLT--LTRTLSLTLTLTLSLSLTLSLTLTLTLG- 91

Query: 424 FSIMCPLA*TSAGT-PVAATL 365
            S+   L  T  GT  V+ TL
Sbjct: 92  RSVTLTLTLTLTGTLTVSLTL 112


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 92   DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 217
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 86  RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 208
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,912,315
Number of Sequences: 59808
Number of extensions: 444010
Number of successful extensions: 1297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)